myRT

myRT report for GCA_008681065.1_ASM868106v1

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Seq: NAKA01000012.1 [Ruminococcus] gnavus isolate LMAG:9 MEG_9_12, whole genome shotgun sequence (881991 bp)
Overview 1 RT 1: 194838-208963 bp Neighborhood of RT #1 [194838, 208963] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII PHA02517 RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII Feature: gene Location: 194838-195029 bp Feature: gene Location: 195084-196955 bp Feature: domain Description: SR_TndX_transposase Location: 195129-195540 bp Feature: domain Description: SR_TndX_transposase Location: 1 951 29-1 95540 bp Feature: domain Description: Recombinase Location: 195645-196020 bp Feature: domain Description: Recombinase Location: 1 95645-1 96020 bp Feature: domain Description: Zn_ribbon_recom Location: 196059-196251 bp Feature: domain Description: Zn_ribbon_recom Location: 1 96059-1 96251 bp Feature: domain Description: DUF4368 Location: 196527-196722 bp Feature: domain Description: DUF4368 Location: 1 96527-1 96722 bp Feature: gene Location: 197018-197692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197021-197240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97021 -1 97240 bp Feature: domain Description: GIIM Note: maturase Location: 197297-197513 bp Feature: domain Description: GIIM Note: maturase Location: 1 97297-1 9751 3 bp Feature: gene Location: 197813-198715 bp Feature: domain Description: Phage_int_SAM_1 Location: 197822-198002 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 97822-1 98002 bp Feature: domain Description: INT_RitC_C_like Location: 198083-198629 bp Feature: domain Description: INT_RitC_C_like Location: 1 98083-1 98629 bp Feature: gene Location: 198807-199790 bp Feature: domain Description: INT_RitB_C_like Location: 199143-199728 bp Feature: domain Description: INT_RitB_C_like Location: 1 991 43-1 99728 bp Feature: gene Location: 199783-201018 bp Feature: domain Description: Phage_int_SAM_1 Location: 200137-200359 bp Feature: domain Description: Phage_int_SAM_1 Location: 2001 37-200359 bp Feature: domain Description: INT_RitA_C_like Location: 200452-200992 bp Feature: domain Description: INT_RitA_C_like Location: 200452-200992 bp Feature: gene Location: 201134-201883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201449-201830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 449-201 830 bp Feature: gene Location: 201929-202072 bp Feature: gene Location: 202395-202553 bp Feature: gene Location: 202685-202882 bp Feature: gene Location: 203178-203840 bp Feature: domain Description: PHA02517 Location: 203193-203832 bp Feature: domain Description: PHA0251 7 Location: 2031 93-203832 bp Feature: gene Location: 204000-204476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204003-204210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204003-20421 0 bp Feature: domain Description: GIIM Note: maturase Location: 204273-204456 bp Feature: domain Description: GIIM Note: maturase Location: 204273-204456 bp Feature: gene Location: 204657-205892 bp Feature: domain Description: Phage_int_SAM_1 Location: 205011-205233 bp Feature: domain Description: Phage_int_SAM_1 Location: 20501 1 -205233 bp Feature: domain Description: INT_RitA_C_like Location: 205326-205866 bp Feature: domain Description: INT_RitA_C_like Location: 205326-205866 bp Feature: gene Location: 205885-206868 bp Feature: domain Description: INT_RitB_C_like Location: 206221-206806 bp Feature: domain Description: INT_RitB_C_like Location: 206221 -206806 bp Feature: gene Location: 206849-207862 bp Feature: domain Description: Phage_int_SAM_1 Location: 206903-207149 bp Feature: domain Description: Phage_int_SAM_1 Location: 206903-2071 49 bp Feature: domain Description: INT_RitC_C_like Location: 207230-207776 bp Feature: domain Description: INT_RitC_C_like Location: 207230-207776 bp Feature: gene Location: 207907-208566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208117-208498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081 1 7-208498 bp Feature: gene Location: 208553-208696 bp Feature: gene Location: 208808-208963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188)
PHA02517 (putative transposase OrfB; Reviewed)