myRT

myRT report for GCA_008681115.1_ASM868111v1

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Seq: NAJX01000010.1 Firmicutes bacterium isolate LMAG:6 MEG_6_10, whole genome shotgun sequence (46584 bp)
Overview 1 RT 1: 2841-7039 bp Neighborhood of RT #1 [2841, 7056] TraG-D_C RVT-GII Intron_maturas2 T4SS-DNA_transf PRK13857 Feature: gene Location: 2841-3248 bp Feature: gene Location: 3444-3788 bp Feature: domain Description: TraG-D_C Location: 3591-3759 bp Feature: domain Description: TraG-D_C Location: 3591 -3759 bp Feature: gene Location: 4338-6167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4614-5448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461 4-5448 bp Feature: domain Description: Intron_maturas2 Location: 5532-5874 bp Feature: domain Description: Intron_maturas2 Location: 5532-5874 bp Feature: gene Location: 6284-6682 bp Feature: domain Description: T4SS-DNA_transf Location: 6296-6509 bp Feature: domain Description: T4SS-DNA_transf Location: 6296-6509 bp Feature: gene Location: 6697-7056 bp Feature: domain Description: PRK13857 Location: 6823-7039 bp Feature: domain Description: PRK1 3857 Location: 6823-7039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), T4SS-DNA_transf (pfam02534), PRK13857 (pilin major subunit VirB2)

Seq: NAJX01000011.1 Firmicutes bacterium isolate LMAG:6 MEG_6_11, whole genome shotgun sequence (404187 bp)
Overview 1 RT 1: 10661-15778 bp 2 RT 2: 367936-370976 bp Neighborhood of RT #1 [10661, 15789] Acetyltransf_1 RVT-GII EcoEI_R_C COG3533 Neighborhood of RT #2 [367936, 370976] Ere-like HTH_XRE RVT-GII GIIM Feature: gene Location: 10661-11134 bp Feature: domain Description: Acetyltransf_1 Location: 10808-11066 bp Feature: domain Description: Acetyltransf_1 Location: 10808-11066 bp Feature: gene Location: 11308-11553 bp Feature: gene Location: 11643-12938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11898-12588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11898-12 588 bp Feature: gene Location: 13250-13699 bp Feature: domain Description: EcoEI_R_C Location: 13259-13631 bp Feature: domain Description: EcoEI_R_C Location: 132 59-13631 bp Feature: gene Location: 13753-15789 bp Feature: domain Description: COG3533 Location: 13789-15778 bp Feature: domain Description: COG3533 Location: 13789-15778 bp Feature: gene Location: 367936-368463 bp Feature: domain Description: Ere-like Location: 368053-368416 bp Feature: domain Description: Ere-like Location: 368053-368416 bp Feature: gene Location: 368579-368938 bp Feature: domain Description: HTH_XRE Location: 368750-368921 bp Feature: domain Description: HTH_XRE Location: 368750-36892 1 bp Feature: gene Location: 369181-370479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369436-370126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369436-37012 6 bp Feature: domain Description: GIIM Note: maturase Location: 370189-370408 bp Feature: domain Description: GIIM Note: maturase Location: 370189-370408 bp Feature: gene Location: 370530-370703 bp Feature: gene Location: 370707-370976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_1 (pfam00583), RVT-GII, EcoEI_R_C (pfam08463), COG3533 (Uncharacterized conserved protein, DUF1680 family ), Ere-like (cd14728), HTH_XRE (smart00530), GIIM (pfam08388)

Seq: NAJX01000016.1 Firmicutes bacterium isolate LMAG:6 MEG_6_16, whole genome shotgun sequence (211304 bp)
Overview 1 RT 1: 106845-110365 bp Neighborhood of RT #1 [106845, 110511] DUF3267 RVT-GII DNA_binding_1 AAA_18 Feature: gene Location: 106845-107438 bp Feature: domain Description: DUF3267 Location: 107085-107391 bp Feature: domain Description: DUF3 267 Location: 107085-1073 91 bp Feature: gene Location: 107594-107839 bp Feature: gene Location: 107929-109224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108184-108874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108184-108874 bp Feature: gene Location: 109416-109892 bp Feature: domain Description: DNA_binding_1 Location: 109566-109815 bp Feature: domain Description: DNA_binding_1 Location: 109566-109815 bp Feature: gene Location: 109966-110511 bp Feature: domain Description: AAA_18 Location: 109987-110365 bp Feature: domain Description: AAA_18 Location: 109987-1103 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3267 (pfam11667), RVT-GII, DNA_binding_1 (pfam01035), AAA_18 (pfam13238)

Seq: NAJX01000002.1 Firmicutes bacterium isolate LMAG:6 MEG_6_2, whole genome shotgun sequence (21788 bp)
Overview 1 RT 1: 5994-8588 bp Neighborhood of RT #1 [5994, 8588] RVT-GII GIIM Feature: gene Location: 5994-6242 bp Feature: gene Location: 6276-6593 bp Feature: gene Location: 6703-8049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7006-7699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7006-7699 bp Feature: domain Description: GIIM Note: maturase Location: 7759-7978 bp Feature: domain Description: GIIM Note: maturase Location: 7759-7978 bp Feature: gene Location: 8052-8225 bp Feature: gene Location: 8229-8588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NAJX01000003.1 Firmicutes bacterium isolate LMAG:6 MEG_6_3, whole genome shotgun sequence (41574 bp)
Overview 1 RT 1: 8301-11684 bp Neighborhood of RT #1 [8301, 11684] RVT-GII Feature: gene Location: 8301-8840 bp Feature: gene Location: 9009-9254 bp Feature: gene Location: 9344-10639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9599-10286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 99-10286 bp Feature: gene Location: 10706-11062 bp Feature: gene Location: 10998-11684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII