myRT

myRT report for GCA_008690275.1_ASM869027v1

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Seq: VWNE01000026.1 Pedobacter tournemirensis strain TF5-37.2-LB10 scaffold26, whole genome shotgun sequence (83931 bp)
Overview 1 RT 1: 33272-36847 bp 2 RT 2: 55808-64532 bp Neighborhood of RT #1 [33272, 36847] RVT-Retrons glucose_DH Neighborhood of RT #2 [55808, 64532] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT-GII group_II_RT_mat HNHc Bac_Flav_CT_G Feature: gene Location: 33272-34546 bp Feature: gene Location: 34509-34733 bp Feature: gene Location: 34745-35839 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34970-35585 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34970-35585 bp Feature: gene Location: 35940-36278 bp Feature: domain Description: glucose_DH Location: 35946-36207 bp Feature: domain Description: glucose_DH Location: 35946-36207 bp Feature: gene Location: 36596-36847 bp Feature: gene Location: 55808-56509 bp Feature: gene Location: 56525-56782 bp Feature: gene Location: 56746-58560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57010-57832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5701 0-57832 bp Feature: domain Description: Intron_maturas2 Location: 57964-58183 bp Feature: domain Description: Intron_maturas2 Location: 57964-581 83 bp Feature: domain Description: HNHc Note: nucleases Location: 58390-58543 bp Feature: domain Description: HNHc Note: nucleases Location: 58390-58543 bp Feature: gene Location: 59111-59716 bp Feature: domain Description: Bac_Flav_CT_G Location: 59237-59708 bp Feature: domain Description: Bac_Flav_CT_G Location: 59237-59708 bp Feature: gene Location: 59706-61514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59970-60789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59970-60789 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 61002-61128 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 61 002-61 1 28 bp Feature: domain Description: HNHc Note: nucleases Location: 61317-61491 bp Feature: domain Description: HNHc Note: nucleases Location: 61 31 7-61 491 bp Feature: gene Location: 62062-63957 bp Feature: domain Description: Bac_Flav_CT_G Location: 62074-63943 bp Feature: domain Description: Bac_Flav_CT_G Location: 62074-63943 bp Feature: gene Location: 64053-64532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, glucose_DH (cd08230), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), group_II_RT_mat (TIGR04416)

Seq: VWNE01000040.1 Pedobacter tournemirensis strain TF5-37.2-LB10 scaffold40, whole genome shotgun sequence (48874 bp)
Overview 1 RT 1: 23468-27023 bp Neighborhood of RT #1 [23468, 27023] Bac_Flav_CT_G RVT_N RVT-GII GIIM Feature: gene Location: 23468-24130 bp Feature: gene Location: 24127-24801 bp Feature: domain Description: Bac_Flav_CT_G Location: 24238-24652 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 42 38-2 4652 bp Feature: gene Location: 24798-26462 bp Feature: RT Description: RVT_N Location: 24849-25092 bp Feature: RT Description: RVT_N Location: 2 4849-2 5092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25137-25785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5137-2 5785 bp Feature: domain Description: GIIM Note: maturase Location: 25845-26073 bp Feature: domain Description: GIIM Note: maturase Location: 2 5845-2 6073 bp Feature: gene Location: 26575-26739 bp Feature: gene Location: 26883-27023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VWNE01000065.1 Pedobacter tournemirensis strain TF5-37.2-LB10 scaffold65, whole genome shotgun sequence (8150 bp)
Overview 1 RT 1: 1517-6672 bp Neighborhood of RT #1 [1517, 6672] TPR TPR TPR RVT-Retrons HTH_3 Feature: gene Location: 1517-1678 bp Feature: gene Location: 1969-4824 bp Feature: domain Description: TPR Location: 1990-2245 bp Feature: domain Description: TPR Location: 1990-2245 bp Feature: domain Description: TPR Location: 2593-2968 bp Feature: domain Description: TPR Location: 2593 -2968 bp Feature: domain Description: TPR Location: 3034-3352 bp Feature: domain Description: TPR Location: 3 03 4-3 3 52 bp Feature: gene Location: 5240-6109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5399-5921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53 99-5921 bp Feature: gene Location: 6112-6396 bp Feature: domain Description: HTH_3 Location: 6133-6265 bp Feature: domain Description: HTH_3 Location: 613 3 -6265 bp Feature: gene Location: 6433-6672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), RVT-Retrons, HTH_3 (pfam01381)

Seq: VWNE01000078.1 Pedobacter tournemirensis strain TF5-37.2-LB10 scaffold78, whole genome shotgun sequence (1904 bp)
Overview 1 RT 1: 81-1902 bp Neighborhood of RT #1 [81, 1902] RVT-GII GIIM Feature: gene Location: 81-1388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 321-939 bp Feature: domain Description: GIIM Note: maturase Location: 996-1203 bp Feature: domain Description: GIIM Note: maturase Location: 996-1203 bp Feature: gene Location: 1750-1902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)