myRT

myRT report for GCA_008692865.1_ASM869286v1

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Seq: VXJX01000017.1 Pseudomonas proteolytica strain CCUG 51515T contig_0000017, whole genome shotgun sequence (112191 bp)
Overview 1 RT 1: 2-2142 bp Neighborhood of RT #1 [2, 2222] RVT-DGRs N6_N4_Mtase Feature: gene Location: 2-538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41-386 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 -386 bp Feature: gene Location: 734-1048 bp Feature: gene Location: 1158-2222 bp Feature: domain Description: N6_N4_Mtase Location: 1227-2142 bp Feature: domain Description: N6_N4_Mtase Location: 1 227-21 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_N4_Mtase (pfam01555), RVT-DGRs

Seq: VXJX01000088.1 Pseudomonas proteolytica strain CCUG 51515T contig_0000088, whole genome shotgun sequence (17225 bp)
Overview 1 RT 1: 9610-14523 bp Neighborhood of RT #1 [9610, 14552] cztS_silS_copS DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 9610-10092 bp Feature: domain Description: cztS_silS_copS Location: 9616-10021 bp Feature: domain Description: cztS_silS_copS Location: 9616-1002 1 bp Feature: gene Location: 10239-10373 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10245-10356 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 102 45-10356 bp Feature: gene Location: 10565-12226 bp Feature: RT Description: RVT_N Location: 10610-10853 bp Feature: RT Description: RVT_N Location: 10610-10853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10898-11534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10898-11534 bp Feature: domain Description: GIIM Note: maturase Location: 11591-11819 bp Feature: domain Description: GIIM Note: maturase Location: 11591-11819 bp Feature: gene Location: 12784-14193 bp Feature: domain Description: LZ_Tnp_IS66 Location: 12991-13204 bp Feature: domain Description: LZ_Tnp_IS66 Location: 12 991-132 04 bp Feature: domain Description: zf-IS66 Location: 13231-13357 bp Feature: domain Description: zf-IS66 Location: 132 31-13357 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13399-14173 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13399-14173 bp Feature: gene Location: 14217-14552 bp Feature: domain Description: TnpB_IS66 Location: 14235-14523 bp Feature: domain Description: TnpB_IS66 Location: 142 35-1452 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), cztS_silS_copS (TIGR01386)

Seq: VXJX01000105.1 Pseudomonas proteolytica strain CCUG 51515T contig_0000105, whole genome shotgun sequence (1415 bp)
Overview 1 RT 1: 98-1413 bp Neighborhood of RT #1 [98, 1412] Avd_like RVT-DGRs Feature: gene Location: 98-454 bp Feature: domain Description: Avd_like Location: 125-434 bp Feature: domain Description: Avd_like Location: 125-43 4 bp Feature: gene Location: 708-1412 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 918-1413 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 918-1413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)