myRT

myRT report for GCA_008693305.1_ASM869330v1

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Seq: VXKW01000005.1 Pseudomonas aeruginosa strain WW NODE_5_length_238217_cov_18.718821, whole genome shotgun sequence (238217 bp)
Overview 1 RT 1: 143542-154275 bp Neighborhood of RT #1 [143542, 154277] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 143542-143877 bp Feature: domain Description: NERD Location: 143641-143812 bp Feature: domain Description: NERD Location: 1 43641 -1 4381 2 bp Feature: gene Location: 143970-145091 bp Feature: domain Description: COG3177 Location: 143988-145080 bp Feature: domain Description: COG31 77 Location: 1 43988-1 45080 bp Feature: gene Location: 145814-147499 bp Feature: RT Description: RVT_N Location: 145871-146111 bp Feature: RT Description: RVT_N Location: 1 45871 -1 461 1 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146159-146795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 461 59-1 46795 bp Feature: domain Description: GIIM Note: maturase Location: 146849-147080 bp Feature: domain Description: GIIM Note: maturase Location: 1 46849-1 47080 bp Feature: domain Description: HNH Note: nucleases Location: 147332-147470 bp Feature: domain Description: HNH Note: nucleases Location: 1 47332-1 47470 bp Feature: gene Location: 148580-152317 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 148688-149345 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 48688-1 49345 bp Feature: domain Description: PRK09776 Location: 149558-150029 bp Feature: domain Description: PRK09776 Location: 1 49558-1 50029 bp Feature: domain Description: PAS Location: 150074-150611 bp Feature: domain Description: PAS Location: 1 50074-1 5061 1 bp Feature: domain Description: PRK10060 Location: 150620-152267 bp Feature: domain Description: PRK1 0060 Location: 1 50620-1 52267 bp Feature: gene Location: 152424-154277 bp Feature: domain Description: PRK05658 Location: 152436-154275 bp Feature: domain Description: PRK05658 Location: 1 52436-1 54275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)