myRT

myRT report for GCA_008694965.1_ASM869496v1

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Seq: VUAJ01000215.1 Lactobacillus crispatus strain NCK777 NODE_215_length_2755_cov_6.899259, whole genome shotgun sequence (2755 bp)
Overview 1 RT 1: 140-2637 bp Neighborhood of RT #1 [140, 2753] ribH RVT-GII group_II_RT_mat Tra8 Feature: gene Location: 140-604 bp Feature: domain Description: ribH Location: 143-599 bp Feature: domain Description: ribH Location: 1 43-599 bp Feature: gene Location: 879-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 882-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 882-960 bp Feature: gene Location: 1229-1411 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1262-1385 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 262-1 385 bp Feature: gene Location: 2283-2753 bp Feature: domain Description: Tra8 Location: 2286-2637 bp Feature: domain Description: Tra8 Location: 2286-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribH (PRK00061), RVT-GII, group_II_RT_mat (TIGR04416), Tra8 (COG2826)

Seq: VUAJ01000057.1 Lactobacillus crispatus strain NCK777 NODE_57_length_7227_cov_10.932655, whole genome shotgun sequence (7227 bp)
Overview 1 RT 1: 3942-7216 bp Neighborhood of RT #1 [3942, 7224] HTH_LacI PBP1_Qymf_like RVT-GII GIIM SunT Feature: gene Location: 3942-4928 bp Feature: domain Description: HTH_LacI Location: 3963-4110 bp Feature: domain Description: HTH_LacI Location: 3963-4110 bp Feature: domain Description: PBP1_Qymf_like Location: 4128-4923 bp Feature: domain Description: PBP1_Qymf_like Location: 412 8-492 3 bp Feature: gene Location: 5000-5287 bp Feature: gene Location: 5242-6297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5443-6061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5443-6061 bp Feature: domain Description: GIIM Note: maturase Location: 6118-6250 bp Feature: domain Description: GIIM Note: maturase Location: 6118-62 50 bp Feature: gene Location: 6904-7224 bp Feature: domain Description: SunT Location: 6910-7216 bp Feature: domain Description: SunT Location: 6910-72 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LacI (cd01392), PBP1_Qymf_like, RVT-GII, GIIM (pfam08388), SunT (COG2274)

Seq: VUAJ01000086.1 Lactobacillus crispatus strain NCK777 NODE_86_length_5754_cov_6.640639, whole genome shotgun sequence (5754 bp)
Overview 1 RT 1: 1556-5696 bp Neighborhood of RT #1 [1556, 5752] DHDPS-like PurR RVT-GII GIIM DUF3100 Feature: gene Location: 1556-2515 bp Feature: domain Description: DHDPS-like Location: 1586-2468 bp Feature: domain Description: DHDPS-like Location: 1586-2468 bp Feature: gene Location: 2529-3521 bp Feature: domain Description: PurR Location: 2535-3519 bp Feature: domain Description: PurR Location: 253 5-3 519 bp Feature: gene Location: 4032-4463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041-4233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041-423 3 bp Feature: domain Description: GIIM Note: maturase Location: 4287-4458 bp Feature: domain Description: GIIM Note: maturase Location: 4287-4458 bp Feature: gene Location: 4603-5094 bp Feature: gene Location: 5087-5752 bp Feature: domain Description: DUF3100 Location: 5117-5696 bp Feature: domain Description: DUF3 100 Location: 5117-5696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHDPS-like (cd00408), PurR (COG1609), RVT-GII, GIIM (pfam08388), DUF3100 (pfam11299)