myRT

myRT report for GCA_008694975.1_ASM869497v1

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Seq: VUAK01000105.1 Lactobacillus crispatus strain NCK953 NODE_105_length_615_cov_34.830357, whole genome shotgun sequence (615 bp)
Overview 1 RT 1: 2-457 bp Neighborhood of RT #1 [2, 483] RVT-GII group_II_RT_mat Feature: gene Location: 2-175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-1 04 bp Feature: gene Location: 301-483 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 334-457 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 334-457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: VUAK01000010.1 Lactobacillus crispatus strain NCK953 NODE_10_length_50561_cov_60.943432, whole genome shotgun sequence (50561 bp)
Overview 1 RT 1: 2897-8609 bp Neighborhood of RT #1 [2897, 8614] HipB SunT RVT-GII GIIM HTH_LacI PBP1_Qymf_like Feature: gene Location: 2897-3742 bp Feature: domain Description: HipB Location: 2927-3143 bp Feature: domain Description: HipB Location: 2 92 7-3143 bp Feature: gene Location: 4071-5648 bp Feature: domain Description: SunT Location: 4119-5640 bp Feature: domain Description: SunT Location: 4119-5640 bp Feature: gene Location: 6255-7310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6456-7074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6456-7074 bp Feature: domain Description: GIIM Note: maturase Location: 7131-7263 bp Feature: domain Description: GIIM Note: maturase Location: 7131-72 63 bp Feature: gene Location: 7265-7552 bp Feature: gene Location: 7628-8614 bp Feature: domain Description: HTH_LacI Location: 7649-7796 bp Feature: domain Description: HTH_LacI Location: 7649-7796 bp Feature: domain Description: PBP1_Qymf_like Location: 7814-8609 bp Feature: domain Description: PBP1_Qymf_like Location: 7814-8609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), SunT (COG2274), RVT-GII, GIIM (pfam08388), HTH_LacI (cd01392), PBP1_Qymf_like

Seq: VUAK01000014.1 Lactobacillus crispatus strain NCK953 NODE_14_length_42349_cov_55.589138, whole genome shotgun sequence (42349 bp)
Overview 1 RT 1: 28803-32854 bp Neighborhood of RT #1 [28803, 32883] COG2461 QdoI RVT-GII RVT-GII GIIM cysteine_hydrolases Feature: gene Location: 28803-29228 bp Feature: domain Description: COG2461 Location: 28812-29193 bp Feature: domain Description: COG2461 Location: 28812-29193 bp Feature: gene Location: 29743-30156 bp Feature: domain Description: QdoI Location: 29818-30127 bp Feature: domain Description: QdoI Location: 29818-3 0127 bp Feature: gene Location: 30770-31189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30971-31178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0971-3 1178 bp Feature: gene Location: 31299-32069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31302-31590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 13 02-3 1590 bp Feature: domain Description: GIIM Note: maturase Location: 31647-31854 bp Feature: domain Description: GIIM Note: maturase Location: 3 1647-3 1854 bp Feature: gene Location: 32159-32326 bp Feature: gene Location: 32338-32883 bp Feature: domain Description: cysteine_hydrolases Location: 32350-32854 bp Feature: domain Description: cysteine_hydrolases Location: 3 23 50-3 2854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2461 (Uncharacterized conserved protein, DUF438 domain, may contain hemerythrin domain ), QdoI (COG1917), RVT-GII, GIIM (pfam08388), cysteine_hydrolases (cl00220)

Seq: VUAK01000017.1 Lactobacillus crispatus strain NCK953 NODE_17_length_41580_cov_62.919591, whole genome shotgun sequence (41580 bp)
Overview 1 RT 1: 129-3146 bp Neighborhood of RT #1 [129, 3146] RVT-AbiA HEPN_AbiA_CTD Feature: gene Location: 129-1964 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 372-870 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 372-870 bp Feature: domain Description: HEPN_AbiA_CTD Location: 1512-1926 bp Feature: domain Description: HEPN_AbiA_CTD Location: 1512-1926 bp Feature: gene Location: 1998-2828 bp Feature: gene Location: 2976-3146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, HEPN_AbiA_CTD (pfam18732)

Seq: VUAK01000058.1 Lactobacillus crispatus strain NCK953 NODE_58_length_7359_cov_39.458790, whole genome shotgun sequence (7359 bp)
Overview 1 RT 1: 3-6813 bp Neighborhood of RT #1 [3, 6836] YSIRK_signal GH43_GsAbnA-like GH43_C SlpA SlpA RVT-GII GIIM DDE_Tnp_1 PRK03103 Feature: gene Location: 3-2483 bp Feature: domain Description: YSIRK_signal Location: 39-114 bp Feature: domain Description: YSIRK_signal Location: 39-114 bp Feature: domain Description: GH43_GsAbnA-like Location: 492-1632 bp Feature: domain Description: GH43_GsAbnA-like Location: 492-1632 bp Feature: domain Description: GH43_C Location: 1659-2001 bp Feature: domain Description: GH43_C Location: 165 9-2001 bp Feature: domain Description: SlpA Location: 2121-2280 bp Feature: domain Description: SlpA Location: 2121-2280 bp Feature: domain Description: SlpA Location: 2307-2466 bp Feature: domain Description: SlpA Location: 2307-2466 bp Feature: gene Location: 2679-2810 bp Feature: gene Location: 3064-3732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3076-3253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3076-325 3 bp Feature: domain Description: GIIM Note: maturase Location: 3307-3520 bp Feature: domain Description: GIIM Note: maturase Location: 3307-35 20 bp Feature: gene Location: 3904-5262 bp Feature: domain Description: DDE_Tnp_1 Location: 4318-5017 bp Feature: domain Description: DDE_Tnp_1 Location: 4318-5 017 bp Feature: gene Location: 5517-6836 bp Feature: domain Description: PRK03103 Location: 5547-6813 bp Feature: domain Description: PRK03103 Location: 5 5 47-6813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YSIRK_signal (TIGR01168), GH43_GsAbnA-like (cd18832), GH43_C (pfam16369), SlpA (COG1047), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), PRK03103 (DNA polymerase IV; Reviewed)