myRT

myRT report for GCA_008710235.1_ASM871023v1

Download annotations/find similar RTs

Seq: VYQC01000021.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (81870 bp)
Overview 1 RT 1: 10459-16503 bp Neighborhood of RT #1 [10459, 17156] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 10459-11037 bp Feature: domain Description: NGN_SP_UpxY Location: 10537-10819 bp Feature: domain Description: NGN_SP_UpxY Location: 1 0537-1 081 9 bp Feature: domain Description: KOW_NusG Location: 10870-10981 bp Feature: domain Description: KOW_NusG Location: 1 0870-1 0981 bp Feature: gene Location: 11373-12344 bp Feature: domain Description: Phage_int_SAM_5 Location: 11412-11655 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 1 41 2-1 1 655 bp Feature: domain Description: INTN1_C_like Location: 11739-12258 bp Feature: domain Description: INTN1 _C_like Location: 1 1 739-1 2258 bp Feature: gene Location: 12615-14834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12816-13401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 281 6-1 3401 bp Feature: gene Location: 14812-15456 bp Feature: gene Location: 15453-17156 bp Feature: domain Description: REC Location: 16272-16503 bp Feature: domain Description: REC Location: 1 6272-1 6503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: VYQC01000026.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (39866 bp)
Overview 1 RT 1: 24186-28881 bp Neighborhood of RT #1 [24186, 28881] RVT-UG27 Feature: gene Location: 24186-25175 bp Feature: gene Location: 25210-25668 bp Feature: gene Location: 26692-27960 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 26881-27517 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 2 6881-2 7517 bp Feature: gene Location: 27957-28187 bp Feature: gene Location: 28270-28881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: VYQC01000028.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (22348 bp)
Overview 1 RT 1: 17089-20484 bp Neighborhood of RT #1 [17089, 20492] RVT-GII RVT-GII GIIM Transposase_mut IS285 Feature: gene Location: 17089-17217 bp Feature: gene Location: 17286-17531 bp Feature: gene Location: 17821-18309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18157-18295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18157-18295 bp Feature: gene Location: 18321-19175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18339-18738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 3 9-1873 8 bp Feature: domain Description: GIIM Note: maturase Location: 18747-18978 bp Feature: domain Description: GIIM Note: maturase Location: 18747-18978 bp Feature: gene Location: 19287-19592 bp Feature: domain Description: Transposase_mut Location: 19320-19581 bp Feature: domain Description: Transposase_mut Location: 193 20-19581 bp Feature: gene Location: 19632-20492 bp Feature: domain Description: IS285 Location: 19635-20484 bp Feature: domain Description: IS285 Location: 1963 5-20484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), IS285 (COG3328)

Seq: VYQC01000004.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (440994 bp)
Overview 1 RT 1: 360145-364087 bp Neighborhood of RT #1 [360145, 364224] DUF1566 Avd_like RVT-DGRs Esterase Feature: gene Location: 360145-360957 bp Feature: domain Description: DUF1566 Location: 360679-360931 bp Feature: domain Description: DUF1566 Location: 360679-360931 bp Feature: gene Location: 361103-361483 bp Feature: domain Description: Avd_like Location: 361130-361436 bp Feature: domain Description: Avd_like Location: 361130-3614 36 bp Feature: gene Location: 361498-362919 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 361870-362575 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 361870-362575 bp Feature: gene Location: 362885-363160 bp Feature: gene Location: 363226-364224 bp Feature: domain Description: Esterase Location: 363322-364087 bp Feature: domain Description: Esterase Location: 363322-364 087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Esterase (pfam00756)

Seq: VYQC01000006.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (332705 bp)
Overview 1 RT 1: 28577-38804 bp 2 RT 2: 120618-132001 bp Neighborhood of RT #1 [28577, 38804] DUF1566 Avd_like DUF1566 RVT-DGRs Neighborhood of RT #2 [120618, 132001] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 28577-34603 bp Feature: domain Description: DUF1566 Location: 34292-34592 bp Feature: domain Description: DUF15 66 Location: 34292-345 92 bp Feature: gene Location: 34733-35134 bp Feature: domain Description: Avd_like Location: 34772-35111 bp Feature: domain Description: Avd_like Location: 34772-35 111 bp Feature: gene Location: 35147-36568 bp Feature: domain Description: DUF1566 Location: 35219-35363 bp Feature: domain Description: DUF15 66 Location: 35 219-35 363 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35552-36293 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35 5 5 2-36293 bp Feature: gene Location: 36559-36912 bp Feature: gene Location: 36975-38804 bp Feature: gene Location: 120618-121763 bp Feature: domain Description: Arm-DNA-bind_5 Location: 120642-120888 bp Feature: domain Description: Arm-DNA-bind_5 Location: 120642-120888 bp Feature: domain Description: Phage_int_SAM_5 Location: 120927-121212 bp Feature: domain Description: Phage_int_SAM_5 Location: 120927-121212 bp Feature: domain Description: INTN1_C_like Location: 121251-121725 bp Feature: domain Description: INTN1_C_like Location: 12125 1-121725 bp Feature: gene Location: 121813-122307 bp Feature: gene Location: 122309-123664 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 122585-123176 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1225 85 -123176 bp Feature: gene Location: 124037-130825 bp Feature: domain Description: Laminin_G_3 Location: 126476-126854 bp Feature: domain Description: Laminin_G_3 Location: 126476-12685 4 bp Feature: domain Description: CotH Location: 127682-128162 bp Feature: domain Description: CotH Location: 127682-128162 bp Feature: domain Description: LRR_AMN1 Location: 128582-129029 bp Feature: domain Description: LRR_AMN1 Location: 1285 82-129029 bp Feature: gene Location: 130835-132001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: VYQC01000007.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (327376 bp)
Overview 1 RT 1: 248484-260915 bp Neighborhood of RT #1 [248484, 261046] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 248484-249344 bp Feature: domain Description: PDDEXK_2 Location: 248505-249183 bp Feature: domain Description: PDDEXK_2 Location: 248505-249183 bp Feature: gene Location: 249513-251720 bp Feature: gene Location: 251928-253058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252249-252792 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 252249-252792 bp Feature: gene Location: 253109-259150 bp Feature: domain Description: DUF4011 Location: 254339-254852 bp Feature: domain Description: DUF4011 Location: 254339-254852 bp Feature: domain Description: DEXXQc_SF1 Location: 255191-255620 bp Feature: domain Description: DEXXQc_SF1 Location: 255191-2556 20 bp Feature: domain Description: DEXXQc_SF1 Location: 256619-257378 bp Feature: domain Description: DEXXQc_SF1 Location: 256 6 19-257378 bp Feature: domain Description: TIGR00376 Location: 257507-257897 bp Feature: domain Description: TIGR00376 Location: 257507-257897 bp Feature: domain Description: MTES_1575 Location: 258050-258335 bp Feature: domain Description: MTES_1575 Location: 258050-258335 bp Feature: domain Description: DUF3320 Location: 258665-258800 bp Feature: domain Description: DUF3320 Location: 2586 6 5-258800 bp Feature: gene Location: 259247-261046 bp Feature: domain Description: rpsA Location: 259316-260915 bp Feature: domain Description: rpsA Location: 259316 -26 0915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: VYQC01000009.1 Bacteroides xylanisolvens strain H204, whole genome shotgun sequence (275358 bp)
Overview 1 RT 1: 110845-112388 bp 2 RT 2: 180091-185380 bp Neighborhood of RT #1 [110845, 112388] RVT-GII HTH_28 Neighborhood of RT #2 [180091, 185394] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 110845-111207 bp Feature: gene Location: 111211-111420 bp Feature: gene Location: 111450-111647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111453-111645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111453-111645 bp Feature: gene Location: 111768-112058 bp Feature: domain Description: HTH_28 Location: 111792-111936 bp Feature: domain Description: HTH_28 Location: 1117 92-111936 bp Feature: gene Location: 112236-112388 bp Feature: gene Location: 180091-180441 bp Feature: domain Description: DUF4133 Location: 180106-180376 bp Feature: domain Description: DUF4133 Location: 180106-18037 6 bp Feature: gene Location: 180671-182500 bp Feature: domain Description: Bac_Flav_CT_G Location: 180674-182486 bp Feature: domain Description: Bac_Flav_CT_G Location: 18067 4-182486 bp Feature: gene Location: 183047-184858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183311-184133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183311-184133 bp Feature: domain Description: Intron_maturas2 Location: 184208-184523 bp Feature: domain Description: Intron_maturas2 Location: 184208-184523 bp Feature: domain Description: HNHc Note: nucleases Location: 184679-184829 bp Feature: domain Description: HNHc Note: nucleases Location: 18467 9-184829 bp Feature: gene Location: 184936-185214 bp Feature: domain Description: Bac_Flav_CT_G Location: 184954-185212 bp Feature: domain Description: Bac_Flav_CT_G Location: 184954-185212 bp Feature: gene Location: 185221-185394 bp Feature: domain Description: Bac_Flav_CT_G Location: 185224-185380 bp Feature: domain Description: Bac_Flav_CT_G Location: 185224-185380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)