myRT

myRT report for GCA_008711495.1_ASM871149v1

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Seq: VXKR01000093.1 Cysteiniphilum sp. SYW-8 SYW-8_S17_L001_R1_001_(paired)_contig_150, whole genome shotgun sequence (2126 bp)
Overview 1 RT 1: 2-2125 bp Neighborhood of RT #1 [2, 2125] RVT-GII GIIM Feature: gene Location: 2-184 bp Feature: gene Location: 663-1967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894-1 51 2 bp Feature: domain Description: GIIM Note: maturase Location: 1557-1755 bp Feature: domain Description: GIIM Note: maturase Location: 1 557-1 755 bp Feature: gene Location: 1979-2125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VXKR01000012.1 Cysteiniphilum sp. SYW-8 SYW-8_S17_L001_R1_001_(paired)_contig_17, whole genome shotgun sequence (135546 bp)
Overview 1 RT 1: 7784-11811 bp Neighborhood of RT #1 [7784, 11828] Cas1 RVT-GII GIIM RelE YiaG Feature: gene Location: 7784-8794 bp Feature: domain Description: Cas1 Location: 7925-8654 bp Feature: domain Description: Cas1 Location: 792 5-8654 bp Feature: gene Location: 8944-9135 bp Feature: gene Location: 9213-10472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9432-10086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9432 -10086 bp Feature: domain Description: GIIM Note: maturase Location: 10170-10398 bp Feature: domain Description: GIIM Note: maturase Location: 10170-10398 bp Feature: gene Location: 11218-11538 bp Feature: domain Description: RelE Location: 11251-11479 bp Feature: domain Description: RelE Location: 112 51-11479 bp Feature: gene Location: 11574-11828 bp Feature: domain Description: YiaG Location: 11583-11811 bp Feature: domain Description: YiaG Location: 11583-11811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), YiaG (COG2944), Cas1 (COG1518), RVT-GII, GIIM (pfam08388)

Seq: VXKR01000019.1 Cysteiniphilum sp. SYW-8 SYW-8_S17_L001_R1_001_(paired)_contig_25, whole genome shotgun sequence (11102 bp)
Overview 1 RT 1: 5358-10639 bp Neighborhood of RT #1 [5358, 10992] PinE DUF4158 DDE_Tnp_Tn3 RVT-GII Feature: gene Location: 5358-6062 bp Feature: domain Description: PinE Location: 5502-6045 bp Feature: domain Description: PinE Location: 5502-6045 bp Feature: gene Location: 6089-9145 bp Feature: domain Description: DUF4158 Location: 6116-6593 bp Feature: domain Description: DUF4158 Location: 6116-6593 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7874-9053 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 7874-9053 bp Feature: gene Location: 9667-10992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9952-10639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9952-1063 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT-GII

Seq: VXKR01000029.1 Cysteiniphilum sp. SYW-8 SYW-8_S17_L001_R1_001_(paired)_contig_46, whole genome shotgun sequence (31847 bp)
Overview 1 RT 1: 7159-12154 bp Neighborhood of RT #1 [7159, 12216] Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 7159-7416 bp Feature: gene Location: 7413-9137 bp Feature: domain Description: Resolvase Location: 7425-7866 bp Feature: domain Description: Resolvase Location: 74 25-7866 bp Feature: domain Description: Recombinase Location: 7956-8319 bp Feature: domain Description: Recombinase Location: 7956-8319 bp Feature: domain Description: Zn_ribbon_recom Location: 8361-8562 bp Feature: domain Description: Zn_ribbon_recom Location: 8361-8562 bp Feature: gene Location: 9515-10765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9719-10376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9719-10376 bp Feature: domain Description: GIIM Note: maturase Location: 10457-10679 bp Feature: domain Description: GIIM Note: maturase Location: 104 57-10679 bp Feature: gene Location: 10936-11175 bp Feature: gene Location: 11269-12216 bp Feature: domain Description: DDE_Tnp_1 Location: 11794-12154 bp Feature: domain Description: DDE_Tnp_1 Location: 11794 -12154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388)

Seq: VXKR01000031.1 Cysteiniphilum sp. SYW-8 SYW-8_S17_L001_R1_001_(paired)_contig_51, whole genome shotgun sequence (9314 bp)
Overview 1 RT 1: 69-3655 bp Neighborhood of RT #1 [69, 3655] WcaG RVT_N RVT-GII GIIM Feature: gene Location: 69-995 bp Feature: domain Description: WcaG Location: 72-972 bp Feature: domain Description: WcaG Location: 72-972 bp Feature: gene Location: 1059-1217 bp Feature: gene Location: 1315-2778 bp Feature: RT Description: RVT_N Location: 1354-1597 bp Feature: RT Description: RVT_N Location: 135 4-15 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1642-2269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1642-2269 bp Feature: domain Description: GIIM Note: maturase Location: 2326-2551 bp Feature: domain Description: GIIM Note: maturase Location: 2326-25 5 1 bp Feature: gene Location: 2957-3115 bp Feature: gene Location: 3350-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), WcaG (COG0451)