myRT

myRT report for GCA_008728025.1_ASM872802v1

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Seq: VYXQ01000020.1 Ochrobactrum quorumnocens strain RPTAtOch1 scaffold_19, whole genome shotgun sequence (105357 bp)
Overview 1 RT 1: 12992-17810 bp Neighborhood of RT #1 [12992, 17815] INT_Rci_Hp1_C RVT-UG7 PRK12278 Feature: gene Location: 12992-13984 bp Feature: domain Description: INT_Rci_Hp1_C Location: 13478-13949 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 3478-1 3949 bp Feature: gene Location: 14217-15146 bp Feature: gene Location: 15211-16749 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 15628-16021 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 5628-1 6021 bp Feature: gene Location: 16937-17104 bp Feature: gene Location: 17321-17815 bp Feature: domain Description: PRK12278 Location: 17387-17810 bp Feature: domain Description: PRK1 2278 Location: 1 7387-1 781 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT-UG7, PRK12278 (50S ribosomal protein L21)

Seq: VYXQ01000041.1 Ochrobactrum quorumnocens strain RPTAtOch1 scaffold_40, whole genome shotgun sequence (10498 bp)
Overview 1 RT 1: 2320-7919 bp Neighborhood of RT #1 [2320, 7921] DUF4096 COG3293 RVT-GII autotrns_rpt PRK15319 autotrans_barl Feature: gene Location: 2320-2667 bp Feature: domain Description: DUF4096 Location: 2341-2548 bp Feature: domain Description: DUF4096 Location: 2 341-2 548 bp Feature: gene Location: 2781-3113 bp Feature: domain Description: COG3293 Location: 2796-2961 bp Feature: domain Description: COG32 93 Location: 2 796-2 961 bp Feature: gene Location: 3475-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3748-3817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3748-3817 bp Feature: gene Location: 3965-4108 bp Feature: gene Location: 4568-7921 bp Feature: domain Description: autotrns_rpt Location: 5741-5783 bp Feature: domain Description: autotrns_rpt Location: 5741-5783 bp Feature: domain Description: PRK15319 Location: 5951-6308 bp Feature: domain Description: PRK15319 Location: 5951-6308 bp Feature: domain Description: autotrans_barl Location: 6431-7919 bp Feature: domain Description: autotrans_barl Location: 6431-7919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), COG3293 (Transposase ), RVT-GII, autotrns_rpt (TIGR02601), PRK15319 (fibronectin-binding autotransporter adhesin ShdA), autotrans_barl (TIGR01414)