myRT

myRT report for GCA_008728535.2_ASM872853v2

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Seq: JAAMPL010000013.1 Bacillus megaterium strain IN_103 tig00000025_np1212, whole genome shotgun sequence (17445 bp)
Overview 1 RT 1: 5498-8349 bp Neighborhood of RT #1 [5498, 8363] RVT_N RVT-GII YdeN Feature: gene Location: 5498-5638 bp Feature: gene Location: 6047-6187 bp Feature: gene Location: 6544-7074 bp Feature: domain Description: RVT_N Location: 6556-6778 bp Feature: domain Description: RVT_N Location: 6556-6778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6832-7027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6832-7027 bp Feature: gene Location: 7153-7311 bp Feature: gene Location: 7980-8363 bp Feature: domain Description: YdeN Location: 7983-8349 bp Feature: domain Description: YdeN Location: 7983-8349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YdeN (COG3545)

Seq: JAAMPL010000015.1 Bacillus megaterium strain IN_103 tig00000026_np1212, whole genome shotgun sequence (20867 bp)
Overview 1 RT 1: 9482-12598 bp Neighborhood of RT #1 [9482, 12598] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 9482-9658 bp Feature: gene Location: 9724-9855 bp Feature: gene Location: 10607-11053 bp Feature: domain Description: RVT_N Location: 10622-10844 bp Feature: domain Description: RVT_N Location: 1062 2 -10844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10898-10979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10898-10979 bp Feature: gene Location: 11498-11638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11504-11552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11504-11552 bp Feature: gene Location: 11653-11832 bp Feature: domain Description: GIIM Note: maturase Location: 11692-11791 bp Feature: domain Description: GIIM Note: maturase Location: 11692 -11791 bp Feature: gene Location: 12314-12598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAMPL010000017.1 Bacillus megaterium strain IN_103 tig00000038_np1212, whole genome shotgun sequence (20242 bp)
Overview 1 RT 1: 13178-15962 bp Neighborhood of RT #1 [13178, 15964] GIIM RVT-GII RVT_N BclA_C Feature: gene Location: 13178-13318 bp Feature: gene Location: 13581-13712 bp Feature: domain Description: GIIM Note: maturase Location: 13590-13680 bp Feature: domain Description: GIIM Note: maturase Location: 13 590-13 680 bp Feature: gene Location: 13969-14505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14089-14488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14089-14488 bp Feature: gene Location: 14510-14731 bp Feature: domain Description: RVT_N Location: 14516-14714 bp Feature: domain Description: RVT_N Location: 14516-14714 bp Feature: gene Location: 15506-15964 bp Feature: domain Description: BclA_C Location: 15578-15962 bp Feature: domain Description: BclA_C Location: 15578-15962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, RVT_N (pfam13655), BclA_C (pfam18573)

Seq: JAAMPL010000021.1 Bacillus megaterium strain IN_103 tig00000009_np1212, whole genome shotgun sequence (139418 bp)
Overview 1 RT 1: 24737-27329 bp Neighborhood of RT #1 [24737, 27329] RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 24737-24994 bp Feature: domain Description: RVT_N Location: 24821-24962 bp Feature: domain Description: RVT_N Location: 24 821-24 962 bp Feature: gene Location: 25199-25366 bp Feature: gene Location: 25430-25687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25436-25679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254 36-25679 bp Feature: gene Location: 25717-26007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25723-25777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25723-25777 bp Feature: domain Description: GIIM Note: maturase Location: 25846-25984 bp Feature: domain Description: GIIM Note: maturase Location: 2584 6-25984 bp Feature: gene Location: 26148-26417 bp Feature: gene Location: 27111-27329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAMPL010000025.1 Bacillus megaterium strain IN_103 tig00000012_np1212, whole genome shotgun sequence (131288 bp)
Overview 1 RT 1: 35438-40703 bp 2 RT 2: 43464-55441 bp 3 RT 3: 118044-122270 bp 4 RT 4: 125279-130406 bp Neighborhood of RT #1 [35438, 40804] Spr KOG4768 RVT-GII Lysozyme_like VirB4 TraC-F-type TraC-F-type Neighborhood of RT #2 [43464, 55441] HNHc RVT-GII TraG_VirD4 TraG_VirD4 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [118044, 122270] Spr RVT-GII Intron_maturas2 HNHc RVT-GII CwlT_like Neighborhood of RT #4 [125279, 130406] RVT-GII HNHc RVT-GII Feature: gene Location: 35438-35710 bp Feature: domain Description: Spr Location: 35510-35669 bp Feature: domain Description: Spr Location: 35 5 10-35 669 bp Feature: gene Location: 35836-36477 bp Feature: domain Description: KOG4768 Location: 35857-36469 bp Feature: domain Description: KOG4768 Location: 35 85 7-36469 bp Feature: gene Location: 36498-37658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36762-37596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36762-375 96 bp Feature: gene Location: 38231-38866 bp Feature: domain Description: Lysozyme_like Location: 38426-38855 bp Feature: domain Description: Lysozyme_like Location: 38426-3885 5 bp Feature: gene Location: 38870-40804 bp Feature: domain Description: VirB4 Location: 38984-39368 bp Feature: domain Description: VirB4 Location: 38984-39368 bp Feature: domain Description: TraC-F-type Location: 39581-39935 bp Feature: domain Description: TraC-F-type Location: 395 81-39935 bp Feature: domain Description: TraC-F-type Location: 40382-40703 bp Feature: domain Description: TraC-F-type Location: 40382-40703 bp Feature: gene Location: 43464-43619 bp Feature: gene Location: 43693-44391 bp Feature: domain Description: HNHc Note: nucleases Location: 44167-44269 bp Feature: domain Description: HNHc Note: nucleases Location: 44167-44269 bp Feature: gene Location: 44388-45536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44739-45432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44739-45 432 bp Feature: gene Location: 46214-47308 bp Feature: gene Location: 47557-50139 bp Feature: domain Description: TraG_VirD4 Location: 48112-48793 bp Feature: domain Description: TraG_VirD4 Location: 48112-48793 bp Feature: domain Description: TraG_VirD4 Location: 49099-49582 bp Feature: domain Description: TraG_VirD4 Location: 49099-495 82 bp Feature: gene Location: 50654-51778 bp Feature: gene Location: 51846-52037 bp Feature: gene Location: 52180-53997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52444-53275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 2444-5 3275 bp Feature: domain Description: Intron_maturas2 Location: 53344-53689 bp Feature: domain Description: Intron_maturas2 Location: 5 3344-5 3689 bp Feature: domain Description: HNHc Note: nucleases Location: 53818-53968 bp Feature: domain Description: HNHc Note: nucleases Location: 5 3818-5 3968 bp Feature: gene Location: 54691-54960 bp Feature: gene Location: 54971-55441 bp Feature: gene Location: 118044-118625 bp Feature: gene Location: 118640-119113 bp Feature: domain Description: Spr Location: 118712-119096 bp Feature: domain Description: Spr Location: 118712-119096 bp Feature: gene Location: 119239-120723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119245-119998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119245 -119998 bp Feature: domain Description: Intron_maturas2 Location: 120070-120373 bp Feature: domain Description: Intron_maturas2 Location: 120070-120373 bp Feature: domain Description: HNHc Note: nucleases Location: 120544-120700 bp Feature: domain Description: HNHc Note: nucleases Location: 1205 44-120700 bp Feature: gene Location: 120729-121064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120993-121041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120993-121041 bp Feature: gene Location: 121717-122070 bp Feature: domain Description: CwlT_like Location: 121726-122059 bp Feature: domain Description: CwlT_like Location: 121726-12205 9 bp Feature: gene Location: 122127-122270 bp Feature: gene Location: 125279-126757 bp Feature: gene Location: 126868-127023 bp Feature: gene Location: 127097-128191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127100-127391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127100-127391 bp Feature: domain Description: HNHc Note: nucleases Location: 127967-128069 bp Feature: domain Description: HNHc Note: nucleases Location: 127967-128069 bp Feature: gene Location: 128314-128670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128395-128656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128395 -12865 6 bp Feature: gene Location: 129733-130155 bp Feature: gene Location: 130176-130406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, Lysozyme_like (pfam13702), VirB4 (COG3451), TraC-F-type (TIGR02746), HNHc (smart00507), TraG_VirD4, Intron_maturas2 (pfam01348), CwlT_like

Seq: JAAMPL010000026.1 Bacillus megaterium strain IN_103 tig00000006_np1212, whole genome shotgun sequence (181698 bp)
Overview 1 RT 1: 26235-31637 bp 2 RT 2: 55520-61934 bp 3 RT 3: 72372-77110 bp 4 RT 4: 100425-106535 bp 5 RT 5: 165852-170803 bp Neighborhood of RT #1 [26235, 31987] COG3547 COG3547 RVT_N RVT-GII GIIM HTH_11 Neighborhood of RT #2 [55520, 61969] HxlR Acetyltransf_1 RVT_N RVT-GII GIIM MFS_MefA_like STAS_RsbR_RsbS_like Neighborhood of RT #3 [72372, 77110] DUF3006 ComEC RVT-GII KOG4768 Neighborhood of RT #4 [100425, 106744] RVT_N RVT-GII RVT-GII GIIM PinE HTH_28 Tra5 Mu-transpos_C Neighborhood of RT #5 [165852, 170803] COG3547 COG3547 RVT_N RVT-GII GIIM Feature: gene Location: 26235-27521 bp Feature: domain Description: COG3547 Location: 26289-26889 bp Feature: domain Description: COG3547 Location: 26 289-26 889 bp Feature: domain Description: COG3547 Location: 26985-27315 bp Feature: domain Description: COG3547 Location: 26 985-27315 bp Feature: gene Location: 27963-28178 bp Feature: gene Location: 28811-30496 bp Feature: domain Description: RVT_N Location: 28895-29141 bp Feature: domain Description: RVT_N Location: 28895-29141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29195-29855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29195-29855 bp Feature: domain Description: GIIM Note: maturase Location: 29921-30155 bp Feature: domain Description: GIIM Note: maturase Location: 29921-30155 bp Feature: gene Location: 30694-31185 bp Feature: gene Location: 31523-31987 bp Feature: domain Description: HTH_11 Location: 31553-31637 bp Feature: domain Description: HTH_11 Location: 31553-316 37 bp Feature: gene Location: 55520-55867 bp Feature: domain Description: HxlR Location: 55556-55859 bp Feature: domain Description: HxlR Location: 55556 -55859 bp Feature: gene Location: 56255-56797 bp Feature: domain Description: Acetyltransf_1 Location: 56381-56687 bp Feature: domain Description: Acetyltransf_1 Location: 56 381-56 6 87 bp Feature: gene Location: 57429-59114 bp Feature: domain Description: RVT_N Location: 57513-57759 bp Feature: domain Description: RVT_N Location: 57513-57759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57813-58473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57813-58473 bp Feature: domain Description: GIIM Note: maturase Location: 58539-58773 bp Feature: domain Description: GIIM Note: maturase Location: 58539-58773 bp Feature: gene Location: 59629-60891 bp Feature: domain Description: MFS_MefA_like Location: 59677-60826 bp Feature: domain Description: MFS_MefA_like Location: 596 77-6 0826 bp Feature: gene Location: 61136-61969 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 61610-61934 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 6 16 10-6 1934 bp Feature: gene Location: 72372-72593 bp Feature: domain Description: DUF3006 Location: 72390-72585 bp Feature: domain Description: DUF3006 Location: 72390-72585 bp Feature: gene Location: 72596-73072 bp Feature: domain Description: ComEC Location: 72602-73070 bp Feature: domain Description: ComEC Location: 726 02-73070 bp Feature: gene Location: 73424-75523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73700-74789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73700-74789 bp Feature: domain Description: KOG4768 Location: 74933-75512 bp Feature: domain Description: KOG476 8 Location: 74933-75512 bp Feature: gene Location: 76250-76411 bp Feature: gene Location: 76880-77110 bp Feature: gene Location: 100425-101213 bp Feature: gene Location: 101623-101829 bp Feature: gene Location: 102238-103167 bp Feature: domain Description: RVT_N Location: 102322-102568 bp Feature: domain Description: RVT_N Location: 102322-10256 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102622-103165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1026 22-10316 5 bp Feature: gene Location: 103177-103923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103183-103282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103183-103282 bp Feature: domain Description: GIIM Note: maturase Location: 103348-103582 bp Feature: domain Description: GIIM Note: maturase Location: 103348-103582 bp Feature: gene Location: 104722-105273 bp Feature: domain Description: PinE Location: 104725-105268 bp Feature: domain Description: PinE Location: 104725-10526 8 bp Feature: gene Location: 105290-106744 bp Feature: domain Description: HTH_28 Location: 105362-105503 bp Feature: domain Description: HTH_28 Location: 10536 2-105503 bp Feature: domain Description: Tra5 Location: 105554-106304 bp Feature: domain Description: Tra5 Location: 105554-106 304 bp Feature: domain Description: Mu-transpos_C Location: 106361-106535 bp Feature: domain Description: Mu-transpos_C Location: 106 36 1-106 535 bp Feature: gene Location: 165852-167138 bp Feature: domain Description: COG3547 Location: 165906-166506 bp Feature: domain Description: COG3547 Location: 16 5906 -16 6 506 bp Feature: domain Description: COG3547 Location: 166602-166932 bp Feature: domain Description: COG3547 Location: 16 6 6 02-16 6 932 bp Feature: gene Location: 167580-167795 bp Feature: gene Location: 168428-169555 bp Feature: domain Description: RVT_N Location: 168512-168758 bp Feature: domain Description: RVT_N Location: 16 8512-16 8758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168812-169472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 8812-16 9472 bp Feature: gene Location: 169578-170114 bp Feature: domain Description: GIIM Note: maturase Location: 169587-169773 bp Feature: domain Description: GIIM Note: maturase Location: 16 9587-16 9773 bp Feature: gene Location: 170312-170803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_11 (pfam08279), HxlR (pfam01638), Acetyltransf_1 (pfam00583), MFS_MefA_like (cd06173), STAS_RsbR_RsbS_like (cd07041), DUF3006 (pfam11213)
ComEC (COG2333), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), PinE (COG1961), HTH_28 (pfam13518), Tra5 (COG2801), Mu-transpos_C (pfam09299)

Seq: JAAMPL010000033.1 Bacillus megaterium strain IN_103 tig00000037_np1212, whole genome shotgun sequence (33706 bp)
Overview 1 RT 1: 10938-14517 bp Neighborhood of RT #1 [10938, 14517] RVT_N RVT-GII Feature: gene Location: 10938-11486 bp Feature: gene Location: 12085-12489 bp Feature: domain Description: RVT_N Location: 12169-12415 bp Feature: domain Description: RVT_N Location: 12169-12415 bp Feature: gene Location: 12876-13211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12942-13125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12942-13125 bp Feature: gene Location: 13369-13764 bp Feature: gene Location: 14251-14517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: JAAMPL010000036.1 Bacillus megaterium strain IN_103 tig00000018_np1212, whole genome shotgun sequence (64851 bp)
Overview 1 RT 1: 1413-6860 bp Neighborhood of RT #1 [1413, 6934] GsiB RVT-GII RVT-GII MDR_like_2 TetR_C_11 Feature: gene Location: 1413-1631 bp Feature: domain Description: GsiB Location: 1428-1623 bp Feature: domain Description: GsiB Location: 1428 -1623 bp Feature: gene Location: 2435-2647 bp Feature: gene Location: 2892-3119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901-2997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2901-2997 bp Feature: gene Location: 3136-3381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3181-3376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318 1-3376 bp Feature: gene Location: 5275-5997 bp Feature: domain Description: MDR_like_2 Location: 5314-5890 bp Feature: domain Description: MDR_like_2 Location: 5314-58 90 bp Feature: gene Location: 6635-6934 bp Feature: domain Description: TetR_C_11 Location: 6644-6860 bp Feature: domain Description: TetR_C_11 Location: 6644-68 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GsiB (COG3729), RVT-GII, MDR_like_2 (cd05289), TetR_C_11 (pfam16859)

Seq: JAAMPL010000039.1 Bacillus megaterium strain IN_103 tig00000013_np1212, whole genome shotgun sequence (112850 bp)
Overview 1 RT 1: 11922-16679 bp 2 RT 2: 42700-48510 bp 3 RT 3: 84201-87957 bp Neighborhood of RT #1 [11922, 16693] RVT_N RVT-GII RVT-GII pfam03781 Neighborhood of RT #2 [42700, 48510] RVT-GII RVT-GII Intron_maturas2 SpoOE-like Neighborhood of RT #3 [84201, 87957] RVT_N RVT-GII GIIM nirV Feature: gene Location: 11922-12107 bp Feature: gene Location: 12983-13222 bp Feature: gene Location: 14090-14848 bp Feature: domain Description: RVT_N Location: 14174-14420 bp Feature: domain Description: RVT_N Location: 14174-14420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14474-14741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14474-14741 bp Feature: gene Location: 14961-15215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14973-15132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149 73-15132 bp Feature: gene Location: 15342-15719 bp Feature: gene Location: 15944-16693 bp Feature: domain Description: pfam03781 Location: 16097-16679 bp Feature: domain Description: pfam03781 Location: 1609 7-16679 bp Feature: gene Location: 42700-43041 bp Feature: gene Location: 43287-43727 bp Feature: gene Location: 44310-45050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44574-45015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44574-45015 bp Feature: gene Location: 45121-45891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45193-45406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4519 3-45406 bp Feature: domain Description: Intron_maturas2 Location: 45475-45820 bp Feature: domain Description: Intron_maturas2 Location: 45475-45820 bp Feature: gene Location: 47486-47677 bp Feature: domain Description: SpoOE-like Location: 47534-47657 bp Feature: domain Description: SpoOE-like Location: 47534-47657 bp Feature: gene Location: 48223-48510 bp Feature: gene Location: 84201-84344 bp Feature: gene Location: 84576-85049 bp Feature: gene Location: 85684-87369 bp Feature: domain Description: RVT_N Location: 85768-86014 bp Feature: domain Description: RVT_N Location: 85768-86014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86068-86728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86068-86728 bp Feature: domain Description: GIIM Note: maturase Location: 86794-87028 bp Feature: domain Description: GIIM Note: maturase Location: 8679 4-87028 bp Feature: gene Location: 87539-87778 bp Feature: domain Description: nirV Location: 87545-87764 bp Feature: domain Description: nirV Location: 87545-87764 bp Feature: gene Location: 87817-87957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Intron_maturas2 (pfam01348), SpoOE-like (pfam09388), GIIM (pfam08388), nirV (LOAD_nirV)