myRT

myRT report for GCA_008728615.2_ASM872861v2

Download annotations/find similar RTs

Seq: JAAMPM010000013.1 Bacillus megaterium strain IN_430 plasmid pBMV_2 tig00000024_np1212, whole genome shotgun sequence (107363 bp)
Overview 1 RT 1: 73435-75977 bp Neighborhood of RT #1 [73435, 75977] TraG-D_C Intron_maturas2 RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 73435-73728 bp Feature: domain Description: TraG-D_C Location: 73444-73678 bp Feature: domain Description: TraG-D_C Location: 73444-73678 bp Feature: gene Location: 74013-74387 bp Feature: domain Description: Intron_maturas2 Location: 74031-74226 bp Feature: domain Description: Intron_maturas2 Location: 74031 -74226 bp Feature: gene Location: 74423-74638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74435-74507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74435-74507 bp Feature: gene Location: 74643-74789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74685-74781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74685-74781 bp Feature: gene Location: 75330-75494 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 75336-75471 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 75336-75471 bp Feature: gene Location: 75693-75977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Intron_maturas2 (pfam01348), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: JAAMPM010000030.1 Bacillus megaterium strain IN_430 plasmid pNCT2_6 tig00000033_np1212, whole genome shotgun sequence (56669 bp)
Overview 1 RT 1: 46067-50271 bp Neighborhood of RT #1 [46067, 50271] GIIM RVT-GII RVT_N RVT-GII Feature: gene Location: 46067-46207 bp Feature: gene Location: 46310-46777 bp Feature: domain Description: GIIM Note: maturase Location: 46319-46436 bp Feature: domain Description: GIIM Note: maturase Location: 46319-46436 bp Feature: gene Location: 46863-47120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46875-47034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46875-47034 bp Feature: gene Location: 47233-48015 bp Feature: domain Description: RVT_N Location: 47341-47587 bp Feature: domain Description: RVT_N Location: 47341-47587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47641-47908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47641-47908 bp Feature: gene Location: 49011-49841 bp Feature: gene Location: 49981-50271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, RVT_N (pfam13655)

Seq: JAAMPM010000003.1 Bacillus megaterium strain IN_430 tig00000103_np1212, whole genome shotgun sequence (13269 bp)
Overview 1 RT 1: 1-1909 bp Neighborhood of RT #1 [1, 1911] RVT-GII KOG4768 ComEC Feature: gene Location: 1-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91-3 52 bp Feature: domain Description: KOG4768 Location: 496-694 bp Feature: domain Description: KOG4768 Location: 496-694 bp Feature: gene Location: 708-1016 bp Feature: gene Location: 1582-1911 bp Feature: domain Description: ComEC Location: 1585-1909 bp Feature: domain Description: ComEC Location: 1585-1909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), ComEC (COG2333)

Seq: JAAMPM010000017.1 Bacillus megaterium strain IN_430 tig00000047_np1212, whole genome shotgun sequence (50848 bp)
Overview 1 RT 1: 9735-13757 bp Neighborhood of RT #1 [9735, 13757] MDR_like_2 RVT_N RVT-GII GIIM Feature: gene Location: 9735-10352 bp Feature: domain Description: MDR_like_2 Location: 9828-10254 bp Feature: domain Description: MDR_like_2 Location: 9828-10254 bp Feature: gene Location: 11515-11970 bp Feature: domain Description: RVT_N Location: 11599-11845 bp Feature: domain Description: RVT_N Location: 11599-1184 5 bp Feature: gene Location: 11990-12787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11993-12557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11993-12557 bp Feature: domain Description: GIIM Note: maturase Location: 12626-12764 bp Feature: domain Description: GIIM Note: maturase Location: 12626-12764 bp Feature: gene Location: 12928-13197 bp Feature: gene Location: 13593-13757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MDR_like_2 (cd05289), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: JAAMPM010000022.1 Bacillus megaterium strain IN_430 tig00000020_np1212, whole genome shotgun sequence (163593 bp)
Overview 1 RT 1: 86477-91486 bp Neighborhood of RT #1 [86477, 91486] ManC RVT_N RVT-GII GIIM HoxN Feature: gene Location: 86477-86677 bp Feature: gene Location: 86955-87740 bp Feature: domain Description: ManC Location: 87099-87465 bp Feature: domain Description: ManC Location: 87099-87465 bp Feature: gene Location: 88359-90044 bp Feature: domain Description: RVT_N Location: 88443-88689 bp Feature: domain Description: RVT_N Location: 88443-88689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88743-89403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88743-89403 bp Feature: domain Description: GIIM Note: maturase Location: 89469-89703 bp Feature: domain Description: GIIM Note: maturase Location: 89469-89703 bp Feature: gene Location: 90658-91119 bp Feature: domain Description: HoxN Location: 90691-91024 bp Feature: domain Description: HoxN Location: 90691-91024 bp Feature: gene Location: 91202-91486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManC (COG0662), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HoxN (COG3376)

Seq: JAAMPM010000034.1 Bacillus megaterium strain IN_430 tig00000019_np1212, whole genome shotgun sequence (1032839 bp)
Overview 1 RT 1: 554789-561043 bp Neighborhood of RT #1 [554789, 561043] FtsW RVT_N RVT-GII GIIM HNHc Feature: gene Location: 554789-555829 bp Feature: domain Description: FtsW Location: 554798-555791 bp Feature: domain Description: FtsW Location: 554798-555791 bp Feature: gene Location: 556024-556281 bp Feature: gene Location: 557343-559151 bp Feature: domain Description: RVT_N Location: 557391-557637 bp Feature: domain Description: RVT_N Location: 557391-5576 37 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 557691-558363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5576 91-55836 3 bp Feature: domain Description: GIIM Note: maturase Location: 558462-558693 bp Feature: domain Description: GIIM Note: maturase Location: 55846 2-5586 93 bp Feature: domain Description: HNHc Note: nucleases Location: 558903-559071 bp Feature: domain Description: HNHc Note: nucleases Location: 558903-559071 bp Feature: gene Location: 559326-560006 bp Feature: gene Location: 560390-561043 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsW (COG0772), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAMPM010000038.1 Bacillus megaterium strain IN_430 tig00000023_np1212, whole genome shotgun sequence (26146 bp)
Overview 1 RT 1: 1405-4298 bp Neighborhood of RT #1 [1405, 4405] EfiE RVT-UNC SLATT_5 Feature: gene Location: 1405-1686 bp Feature: domain Description: EfiE Location: 1414-1675 bp Feature: domain Description: EfiE Location: 1414-167 5 bp Feature: gene Location: 2644-2799 bp Feature: gene Location: 2844-3182 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2883-3117 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2883-3117 bp Feature: gene Location: 3412-3648 bp Feature: gene Location: 3878-4405 bp Feature: domain Description: SLATT_5 Location: 3881-4298 bp Feature: domain Description: SLATT_5 Location: 3881-4298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EfiE (COG4200), RVT-AbiA/RVT-UG3/RVT-UG13/RVT-Retrons(RVT-UNC), SLATT_5 (pfam18160)