myRT

myRT report for GCA_008795955.1_ASM879595v1

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Seq: VMHN01000011.1 Marinobacter sp. JB02H27 NODE_11_length_147516_cov_62.307757, whole genome shotgun sequence (147516 bp)
Overview 1 RT 1: 65883-67931 bp 2 RT 2: 117767-121368 bp Neighborhood of RT #1 [65883, 68125] HTH_32 RVT-GII Zn_ribbon_recom Neighborhood of RT #2 [117767, 121368] IncA conj_PilL RVT-GII GIIM Feature: gene Location: 65883-66287 bp Feature: domain Description: HTH_32 Location: 65898-66126 bp Feature: domain Description: HTH_32 Location: 65898-661 26 bp Feature: gene Location: 66377-66568 bp Feature: gene Location: 66623-67414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67004-67397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67004-67397 bp Feature: gene Location: 67502-67684 bp Feature: gene Location: 67706-68125 bp Feature: domain Description: Zn_ribbon_recom Location: 67730-67931 bp Feature: domain Description: Zn_ribbon_recom Location: 67730-67931 bp Feature: gene Location: 117767-118723 bp Feature: domain Description: IncA Location: 118088-118382 bp Feature: domain Description: IncA Location: 1 1 8088-1 1 8382 bp Feature: gene Location: 118720-119172 bp Feature: domain Description: conj_PilL Location: 118825-119140 bp Feature: domain Description: conj_PilL Location: 1 1 8825-1 1 91 40 bp Feature: gene Location: 119368-120729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119695-120307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9695-1 20307 bp Feature: domain Description: GIIM Note: maturase Location: 120367-120571 bp Feature: domain Description: GIIM Note: maturase Location: 1 20367-1 20571 bp Feature: gene Location: 120576-121181 bp Feature: gene Location: 121102-121368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), RVT-GII, Zn_ribbon_recom (pfam13408), IncA, conj_PilL (TIGR03748), GIIM (pfam08388)

Seq: VMHN01000014.1 Marinobacter sp. JB02H27 NODE_14_length_46631_cov_64.229378, whole genome shotgun sequence (46631 bp)
Overview 1 RT 1: 43032-46498 bp Neighborhood of RT #1 [43032, 46498] TnpB_IS66 COG3547 RVT-GII Feature: gene Location: 43032-43367 bp Feature: domain Description: TnpB_IS66 Location: 43050-43338 bp Feature: domain Description: TnpB_IS66 Location: 43050-43338 bp Feature: gene Location: 43830-44867 bp Feature: domain Description: COG3547 Location: 43845-44817 bp Feature: domain Description: COG3547 Location: 43845-44817 bp Feature: gene Location: 45525-46262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45939-46233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45939-462 33 bp Feature: gene Location: 46349-46498 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3547 (Transposase ), RVT-GII

Seq: VMHN01000026.1 Marinobacter sp. JB02H27 NODE_26_length_2528_cov_67.047897, whole genome shotgun sequence (2528 bp)
Overview 1 RT 1: 1-2093 bp Neighborhood of RT #1 [1, 2311] RVT-GII GIIM Feature: gene Location: 1-192 bp Feature: gene Location: 445-717 bp Feature: gene Location: 788-2311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1061-1793 bp Feature: domain Description: GIIM Note: maturase Location: 1913-2093 bp Feature: domain Description: GIIM Note: maturase Location: 1913 -2093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)