myRT

myRT report for GCA_008801835.1_ASM880183v1

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Seq: VZOW01000003.1 Cupriavidus pauculus strain CCUG 12507 contig_0000003, whole genome shotgun sequence (374753 bp)
Overview 1 RT 1: 57320-62530 bp Neighborhood of RT #1 [57320, 62535] PRK10888 RVT_N RVT-GII YkfC HNHc rplU Feature: gene Location: 57320-57679 bp Feature: gene Location: 57851-58828 bp Feature: domain Description: PRK10888 Location: 57893-58823 bp Feature: domain Description: PRK1 0888 Location: 57893-58823 bp Feature: gene Location: 58944-60428 bp Feature: domain Description: RVT_N Location: 58950-59028 bp Feature: domain Description: RVT_N Location: 58950-59028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59073-59721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59073-59721 bp Feature: domain Description: YkfC Location: 59853-60075 bp Feature: domain Description: YkfC Location: 59853-60075 bp Feature: domain Description: HNHc Note: nucleases Location: 60231-60390 bp Feature: domain Description: HNHc Note: nucleases Location: 60231 -60390 bp Feature: gene Location: 61837-62010 bp Feature: gene Location: 62224-62535 bp Feature: domain Description: rplU Location: 62227-62530 bp Feature: domain Description: rplU Location: 62227-62530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10888 (octaprenyl diphosphate synthase; Provisional), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), rplU (PRK05573)

Seq: VZOW01000025.1 Cupriavidus pauculus strain CCUG 12507 contig_0000025, whole genome shotgun sequence (83975 bp)
Overview 1 RT 1: 74926-78627 bp Neighborhood of RT #1 [74926, 78629] DUF2933 RVT-GII RVT-GII SapB COG3809 Feature: gene Location: 74926-75180 bp Feature: domain Description: DUF2933 Location: 74971-75100 bp Feature: domain Description: DUF2 933 Location: 74971-75100 bp Feature: gene Location: 75763-76122 bp Feature: gene Location: 76317-76694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76542-76689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76542 -76689 bp Feature: gene Location: 76725-77027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76731-76926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76731-7692 6 bp Feature: gene Location: 77290-77751 bp Feature: domain Description: SapB Location: 77359-77737 bp Feature: domain Description: SapB Location: 77359-77737 bp Feature: gene Location: 78135-78629 bp Feature: domain Description: COG3809 Location: 78354-78627 bp Feature: domain Description: COG3809 Location: 78354-7862 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2933 (pfam11666), RVT-GII, SapB (smart00741), COG3809 (Predicted nucleic acid-binding protein, contains Zn-finger domain )

Seq: VZOW01000036.1 Cupriavidus pauculus strain CCUG 12507 contig_0000036, whole genome shotgun sequence (57074 bp)
Overview 1 RT 1: 334-1079 bp Neighborhood of RT #1 [334, 1079] RVT-Retrons VapB_antitoxin Feature: gene Location: 334-510 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 340-463 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 40-463 bp Feature: gene Location: 727-924 bp Feature: domain Description: VapB_antitoxin Location: 730-859 bp Feature: domain Description: VapB_antitoxin Location: 73 0-859 bp Feature: gene Location: 939-1079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VapB_antitoxin (pfam09957)

Seq: VZOW01000038.1 Cupriavidus pauculus strain CCUG 12507 contig_0000038, whole genome shotgun sequence (53882 bp)
Overview 1 RT 1: 800-4322 bp Neighborhood of RT #1 [800, 4322] TIR_2 DUF3298 RVT-G2L Feature: gene Location: 800-1216 bp Feature: gene Location: 1349-2497 bp Feature: domain Description: TIR_2 Location: 1367-1730 bp Feature: domain Description: TIR_2 Location: 1367-1730 bp Feature: domain Description: DUF3298 Location: 2186-2438 bp Feature: domain Description: DUF3298 Location: 2186-24 38 bp Feature: gene Location: 2540-3733 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 2762-3416 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 2762-34 16 bp Feature: gene Location: 3800-3970 bp Feature: gene Location: 3999-4322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), DUF3298 (pfam11738), RVT-G2L

Seq: VZOW01000043.1 Cupriavidus pauculus strain CCUG 12507 contig_0000043, whole genome shotgun sequence (43224 bp)
Overview 1 RT 1: 4708-10226 bp Neighborhood of RT #1 [4708, 10255] PinE RVT-UG17 TrmB UppP Feature: gene Location: 4708-5178 bp Feature: gene Location: 5301-5963 bp Feature: domain Description: PinE Location: 5310-5889 bp Feature: domain Description: PinE Location: 5 310-5 889 bp Feature: gene Location: 6090-7487 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6318-6921 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 6318-6921 bp Feature: gene Location: 8567-9325 bp Feature: domain Description: TrmB Location: 8660-9323 bp Feature: domain Description: TrmB Location: 8660-9323 bp Feature: gene Location: 9374-10255 bp Feature: domain Description: UppP Location: 9377-10226 bp Feature: domain Description: UppP Location: 9377-10226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG17, TrmB (pfam01978), UppP (COG1968)