myRT

myRT report for GCA_008802315.1_ASM880231v1

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Seq: VZIH01000014.1 Aerococcus sanguinicola strain UMB620 NODE_19_length_66189_cov_8.523100, whole genome shotgun sequence (66189 bp)
Overview 1 RT 1: 34356-43058 bp Neighborhood of RT #1 [34356, 43096] NlpA Strep_his_triad ZinT RVT-Retrons COG0610 RMtype1_S_HinAWORF1578P-TRD2-CR2_like RMtype1_S_HinAWORF1578P-TRD2-CR2_like Feature: gene Location: 34356-35210 bp Feature: domain Description: NlpA Location: 34359-35184 bp Feature: domain Description: NlpA Location: 34359-351 84 bp Feature: gene Location: 35570-36496 bp Feature: domain Description: Strep_his_triad Location: 35792-35912 bp Feature: domain Description: Strep_his_triad Location: 35792-3591 2 bp Feature: domain Description: ZinT Location: 35930-36494 bp Feature: domain Description: ZinT Location: 35930-36494 bp Feature: gene Location: 36932-38689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37076-37670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37076-37670 bp Feature: gene Location: 38765-41872 bp Feature: domain Description: COG0610 Location: 38792-41774 bp Feature: domain Description: COG061 0 Location: 38792-41 774 bp Feature: gene Location: 41885-43096 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 41891-42410 bp Feature: domain Description: RMtype1 _S_HinAWORF1 578P-TRD2-CR2_like Location: 41 891 -4241 0 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 42503-43058 bp Feature: domain Description: RMtype1 _S_HinAWORF1 578P-TRD2-CR2_like Location: 42503-43058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpA (COG1464), Strep_his_triad (pfam04270), ZinT (pfam09223), RVT-Retrons, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_HinAWORF1578P-TRD2-CR2_like (cd17516)

Seq: VZIH01000017.1 Aerococcus sanguinicola strain UMB620 NODE_22_length_52005_cov_7.481167, whole genome shotgun sequence (52005 bp)
Overview 1 RT 1: 17355-28962 bp 2 RT 2: 40768-44852 bp Neighborhood of RT #1 [17355, 28991] COG2433 RVT_N RVT-GII GIIM PHA03411 COG4646 HELICc Cyt_C5_DNA_methylase Neighborhood of RT #2 [40768, 44920] Maff2 RVT-GII HNHc Maff2 SSB_OBF Feature: gene Location: 17355-18011 bp Feature: gene Location: 18055-19383 bp Feature: domain Description: COG2433 Location: 18568-19135 bp Feature: domain Description: COG2 433 Location: 18568-19135 bp Feature: gene Location: 19517-21187 bp Feature: domain Description: RVT_N Location: 19562-19805 bp Feature: domain Description: RVT_N Location: 19562 -19805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19850-20498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19850-2 0498 bp Feature: domain Description: GIIM Note: maturase Location: 20552-20783 bp Feature: domain Description: GIIM Note: maturase Location: 2 0552 -2 0783 bp Feature: gene Location: 21743-28039 bp Feature: domain Description: PHA03411 Location: 24260-24566 bp Feature: domain Description: PHA03411 Location: 2 42 60-2 4566 bp Feature: domain Description: COG4646 Location: 24881-27545 bp Feature: domain Description: COG4646 Location: 2 4881-2 7545 bp Feature: domain Description: HELICc Location: 27593-27959 bp Feature: domain Description: HELICc Location: 2 7593-2 7959 bp Feature: gene Location: 28026-28991 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 28041-28962 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 2 8041-2 8962 bp Feature: gene Location: 40768-41631 bp Feature: gene Location: 41642-41788 bp Feature: domain Description: Maff2 Location: 41693-41783 bp Feature: domain Description: Maff2 Location: 41693-41783 bp Feature: gene Location: 41894-43762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42221-42959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 2 2 1-42 959 bp Feature: domain Description: HNHc Note: nucleases Location: 43490-43652 bp Feature: domain Description: HNHc Note: nucleases Location: 43490-43652 bp Feature: gene Location: 44476-44607 bp Feature: domain Description: Maff2 Location: 44479-44605 bp Feature: domain Description: Maff2 Location: 44479-44605 bp Feature: gene Location: 44609-44920 bp Feature: domain Description: SSB_OBF Location: 44633-44852 bp Feature: domain Description: SSB_OBF Location: 44633-44852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2433 (Possible nuclease of RNase H fold, RuvC/YqgF family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), Cyt_C5_DNA_methylase (cl30459), Maff2 (pfam12750), HNHc (smart00507)
SSB_OBF (cd04496)

Seq: VZIH01000041.1 Aerococcus sanguinicola strain UMB620 NODE_46_length_8823_cov_8.867065, whole genome shotgun sequence (8823 bp)
Overview 1 RT 1: 3-2203 bp Neighborhood of RT #1 [3, 2203] RVT-UG2 Feature: gene Location: 3-1205 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 216-1038 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 216-103 8 bp Feature: gene Location: 1368-1577 bp Feature: gene Location: 1979-2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2