myRT

myRT report for GCA_008802505.1_ASM880250v1

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Seq: VZIN01000176.1 Pseudomonas aeruginosa strain KCJ3K20 NODE_176_length_7192_cov_5.372116, whole genome shotgun sequence (7192 bp)
Overview 1 RT 1: 108-3672 bp Neighborhood of RT #1 [108, 3836] RVT-UG2 PRK06333 HxlR Feature: gene Location: 108-1454 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 357-1143 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 357-1 1 43 bp Feature: gene Location: 1953-3221 bp Feature: domain Description: PRK06333 Location: 1959-3216 bp Feature: domain Description: PRK06333 Location: 1 959-321 6 bp Feature: gene Location: 3330-3836 bp Feature: domain Description: HxlR Location: 3354-3672 bp Feature: domain Description: HxlR Location: 3354-3672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK06333 (beta-ketoacyl-ACP synthase), HxlR (pfam01638)

Seq: VZIN01000006.1 Pseudomonas aeruginosa strain KCJ3K20 NODE_6_length_117063_cov_5.843692, whole genome shotgun sequence (117063 bp)
Overview 1 RT 1: 32173-42479 bp 2 RT 2: 58737-67575 bp Neighborhood of RT #1 [32173, 42481] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [58737, 67604] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 32173-33294 bp Feature: domain Description: COG3177 Location: 32191-33283 bp Feature: domain Description: COG3177 Location: 32 191-332 83 bp Feature: gene Location: 33553-33690 bp Feature: gene Location: 34018-35703 bp Feature: domain Description: RVT_N Location: 34075-34315 bp Feature: domain Description: RVT_N Location: 34075-34315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34363-34999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34363-34999 bp Feature: domain Description: GIIM Note: maturase Location: 35053-35284 bp Feature: domain Description: GIIM Note: maturase Location: 35053-352 84 bp Feature: domain Description: HNH Note: nucleases Location: 35536-35674 bp Feature: domain Description: HNH Note: nucleases Location: 35536-35674 bp Feature: gene Location: 36784-40521 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 36892-37549 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 36892 -37549 bp Feature: domain Description: PRK09776 Location: 37762-38233 bp Feature: domain Description: PRK09776 Location: 37762 -382 33 bp Feature: domain Description: PAS Location: 38290-38815 bp Feature: domain Description: PAS Location: 382 90-38815 bp Feature: domain Description: PRK10060 Location: 38824-40471 bp Feature: domain Description: PRK10060 Location: 3882 4-40471 bp Feature: gene Location: 40628-42481 bp Feature: domain Description: PRK05658 Location: 40640-42479 bp Feature: domain Description: PRK05658 Location: 40640-42 479 bp Feature: gene Location: 58737-59951 bp Feature: domain Description: PRK10770 Location: 58749-59943 bp Feature: domain Description: PRK10770 Location: 58749-59943 bp Feature: gene Location: 60010-62799 bp Feature: domain Description: LptD Location: 60205-62785 bp Feature: domain Description: LptD Location: 602 05-62 785 bp Feature: gene Location: 62932-64644 bp Feature: domain Description: RVT_N Location: 62989-63232 bp Feature: domain Description: RVT_N Location: 62 989-632 32 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63277-63913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 77-63913 bp Feature: domain Description: YkfC Location: 64120-64273 bp Feature: domain Description: YkfC Location: 6412 0-642 73 bp Feature: domain Description: HNH Note: nucleases Location: 64450-64588 bp Feature: domain Description: HNH Note: nucleases Location: 64450-64588 bp Feature: gene Location: 65917-66933 bp Feature: domain Description: COG3178 Location: 65920-66919 bp Feature: domain Description: COG3178 Location: 6592 0-66919 bp Feature: gene Location: 66930-67604 bp Feature: domain Description: NTP_transferase_like_1 Location: 66936-67575 bp Feature: domain Description: NTP_transferase_like_1 Location: 66936-67575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)