myRT

myRT report for GCA_008802565.1_ASM880256v1

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Seq: VZIS01000015.1 Pseudomonas aeruginosa strain KCJ3K73 NODE_15_length_138713_cov_8.332566, whole genome shotgun sequence (138713 bp)
Overview 1 RT 1: 56758-67064 bp Neighborhood of RT #1 [56758, 67066] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 56758-57879 bp Feature: domain Description: COG3177 Location: 56776-57868 bp Feature: domain Description: COG31 77 Location: 56776-57868 bp Feature: gene Location: 58138-58275 bp Feature: gene Location: 58603-60288 bp Feature: RT Description: RVT_N Location: 58660-58900 bp Feature: RT Description: RVT_N Location: 58660-58900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58948-59584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58948-59584 bp Feature: domain Description: GIIM Note: maturase Location: 59638-59869 bp Feature: domain Description: GIIM Note: maturase Location: 59638-59869 bp Feature: domain Description: HNH Note: nucleases Location: 60121-60259 bp Feature: domain Description: HNH Note: nucleases Location: 601 21 -60259 bp Feature: gene Location: 61369-65106 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61477-62134 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 61 477-621 34 bp Feature: domain Description: PRK09776 Location: 62347-62830 bp Feature: domain Description: PRK09776 Location: 62347-62830 bp Feature: domain Description: PAS Location: 62896-63400 bp Feature: domain Description: PAS Location: 62896-63400 bp Feature: domain Description: PRK10060 Location: 63409-65056 bp Feature: domain Description: PRK1 0060 Location: 63409-65056 bp Feature: gene Location: 65213-67066 bp Feature: domain Description: PRK05658 Location: 65225-67064 bp Feature: domain Description: PRK05658 Location: 65225-67064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)