myRT

myRT report for GCA_008802625.1_ASM880262v1

Download annotations/find similar RTs

Seq: VZIU01000184.1 Pseudomonas aeruginosa strain KCJ3K103 NODE_184_length_2034_cov_5.565286, whole genome shotgun sequence (2034 bp)
Overview 1 RT 1: 494-1529 bp Neighborhood of RT #1 [494, 1840] RVT-UG2 Feature: gene Location: 494-1840 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 743-1529 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 743-1 529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: VZIU01000021.1 Pseudomonas aeruginosa strain KCJ3K103 NODE_21_length_81799_cov_6.209484, whole genome shotgun sequence (81799 bp)
Overview 1 RT 1: 1-10118 bp Neighborhood of RT #1 [1, 10120] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1-933 bp Feature: domain Description: COG3177 Location: 19-931 bp Feature: domain Description: COG3177 Location: 19-931 bp Feature: gene Location: 1192-1329 bp Feature: gene Location: 1657-3342 bp Feature: domain Description: RVT_N Location: 1714-1954 bp Feature: domain Description: RVT_N Location: 1714-1954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2002-2638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 002 -2 638 bp Feature: domain Description: GIIM Note: maturase Location: 2692-2923 bp Feature: domain Description: GIIM Note: maturase Location: 2 692 -2 92 3 bp Feature: domain Description: HNH Note: nucleases Location: 3175-3313 bp Feature: domain Description: HNH Note: nucleases Location: 3175-3313 bp Feature: gene Location: 4423-8160 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4531-5188 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 4531-5188 bp Feature: domain Description: PRK09776 Location: 5401-5872 bp Feature: domain Description: PRK09776 Location: 5401-5872 bp Feature: domain Description: PAS Location: 5944-6454 bp Feature: domain Description: PAS Location: 5944-6454 bp Feature: domain Description: PRK10060 Location: 6463-8110 bp Feature: domain Description: PRK10060 Location: 6463-8110 bp Feature: gene Location: 8267-10120 bp Feature: domain Description: PRK05658 Location: 8279-10118 bp Feature: domain Description: PRK05658 Location: 82 79-10118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: VZIU01000029.1 Pseudomonas aeruginosa strain KCJ3K103 NODE_29_length_71567_cov_7.094667, whole genome shotgun sequence (71567 bp)
Overview 1 RT 1: 14441-17833 bp Neighborhood of RT #1 [14441, 17841] DUF2958 HipB RVT-GII GIIM COG5489 Feature: gene Location: 14441-14788 bp Feature: domain Description: DUF2958 Location: 14453-14780 bp Feature: domain Description: DUF2958 Location: 14453 -14780 bp Feature: gene Location: 15053-15346 bp Feature: domain Description: HipB Location: 15074-15263 bp Feature: domain Description: HipB Location: 15074-15263 bp Feature: gene Location: 15552-16928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16506 bp Feature: domain Description: GIIM Note: maturase Location: 16566-16770 bp Feature: domain Description: GIIM Note: maturase Location: 16566-16770 bp Feature: gene Location: 17034-17276 bp Feature: gene Location: 17527-17841 bp Feature: domain Description: COG5489 Location: 17530-17833 bp Feature: domain Description: COG5489 Location: 1753 0-1783 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2958 (pfam11171), HipB (COG1396), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family )