myRT

myRT report for GCA_008806425.1_ASM880642v1

Download annotations/find similar RTs

Seq: VZUL01000002.1 Neorhizobium galegae strain Ng87 unitig_0_87, whole genome shotgun sequence (4986749 bp)
Overview 1 RT 1: 3889321-3893446 bp 2 RT 2: 4192647-4196216 bp 3 RT 3: 4223512-4228195 bp 4 RT 4: 4230741-4234493 bp 5 RT 5: 4330065-4334189 bp 6 RT 6: 4516691-4519664 bp 7 RT 7: 4558992-4568431 bp Neighborhood of RT #1 [3889321, 3893490] Transposase_mut Transposase_mut RVT-GII Tas Neighborhood of RT #2 [4192647, 4196269] Rve RVT-GII GIIM Rve Neighborhood of RT #3 [4223512, 4228281] ParAB_family Rve RVT-GII GIIM Transposase_mut Neighborhood of RT #4 [4230741, 4234552] Rve RVT-GII COG3547 Neighborhood of RT #5 [4330065, 4334200] InsE HTH_32 DDE_3 RVT-UG7 PRK12278 RpmA Neighborhood of RT #6 [4516691, 4519687] Rve RVT-GII GIIM Rve DDE_Tnp_1_2 Neighborhood of RT #7 [4558992, 4568451] LysR Rve RVT-GII GIIM Rve RVT-GII GIIM Rve Rve RVT-GII GIIM Rve LysR Feature: gene Location: 3889321-3890520 bp Feature: domain Description: Transposase_mut Location: 3889330-3890434 bp Feature: domain Description: Transposase_mut Location: 3889330-3890434 bp Feature: gene Location: 3890592-3891134 bp Feature: domain Description: Transposase_mut Location: 3890601-3891129 bp Feature: domain Description: Transposase_mut Location: 3890601 -3891 1 29 bp Feature: gene Location: 3891183-3891992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3891387-3891942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3891 387-3891 942 bp Feature: gene Location: 3892102-3892278 bp Feature: gene Location: 3892477-3893490 bp Feature: domain Description: Tas Location: 3892480-3893446 bp Feature: domain Description: Tas Location: 3892480-3893446 bp Feature: gene Location: 4192647-4193210 bp Feature: gene Location: 4193708-4194190 bp Feature: domain Description: Rve Location: 4193735-4194116 bp Feature: domain Description: Rve Location: 41 93735-41 941 1 6 bp Feature: gene Location: 4194229-4195488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4194433-4195090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 94433-41 95090 bp Feature: domain Description: GIIM Note: maturase Location: 4195171-4195402 bp Feature: domain Description: GIIM Note: maturase Location: 41 951 71 -41 95402 bp Feature: gene Location: 4195598-4195774 bp Feature: gene Location: 4195973-4196269 bp Feature: domain Description: Rve Location: 4195994-4196216 bp Feature: domain Description: Rve Location: 41 95994-41 9621 6 bp Feature: gene Location: 4223512-4224183 bp Feature: domain Description: ParAB_family Location: 4223521-4223980 bp Feature: domain Description: ParAB_family Location: 4223521 -4223980 bp Feature: gene Location: 4224785-4225270 bp Feature: domain Description: Rve Location: 4224812-4225193 bp Feature: domain Description: Rve Location: 422481 2-42251 93 bp Feature: gene Location: 4225309-4226568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4225513-4226170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422551 3-42261 70 bp Feature: domain Description: GIIM Note: maturase Location: 4226251-4226482 bp Feature: domain Description: GIIM Note: maturase Location: 4226251 -4226482 bp Feature: gene Location: 4226678-4226854 bp Feature: gene Location: 4227082-4228281 bp Feature: domain Description: Transposase_mut Location: 4227091-4228195 bp Feature: domain Description: Transposase_mut Location: 4227091 -42281 95 bp Feature: gene Location: 4230741-4230869 bp Feature: gene Location: 4230886-4231374 bp Feature: domain Description: Rve Location: 4230916-4231324 bp Feature: domain Description: Rve Location: 423091 6-4231 324 bp Feature: gene Location: 4231226-4232671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4231430-4232087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4231 430-4232087 bp Feature: gene Location: 4232782-4232958 bp Feature: gene Location: 4233509-4234552 bp Feature: domain Description: COG3547 Location: 4233524-4234493 bp Feature: domain Description: COG3547 Location: 4233524-4234493 bp Feature: gene Location: 4330065-4330520 bp Feature: domain Description: InsE Location: 4330158-4330491 bp Feature: domain Description: InsE Location: 43301 58-4330491 bp Feature: gene Location: 4330715-4331680 bp Feature: domain Description: HTH_32 Location: 4330781-4330982 bp Feature: domain Description: HTH_32 Location: 4330781 -4330982 bp Feature: domain Description: DDE_3 Location: 4331117-4331555 bp Feature: domain Description: DDE_3 Location: 4331 1 1 7-4331 555 bp Feature: gene Location: 4331772-4332995 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4332189-4332579 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 43321 89-4332579 bp Feature: gene Location: 4333587-4333898 bp Feature: domain Description: PRK12278 Location: 4333590-4333896 bp Feature: domain Description: PRK1 2278 Location: 4333590-4333896 bp Feature: gene Location: 4333931-4334200 bp Feature: domain Description: RpmA Location: 4333934-4334189 bp Feature: domain Description: RpmA Location: 4333934-43341 89 bp Feature: gene Location: 4516691-4516987 bp Feature: domain Description: Rve Location: 4516712-4516934 bp Feature: domain Description: Rve Location: 451 671 2-451 6934 bp Feature: gene Location: 4517186-4517362 bp Feature: gene Location: 4517472-4518731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4517676-4518333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 7676-451 8333 bp Feature: domain Description: GIIM Note: maturase Location: 4518414-4518645 bp Feature: domain Description: GIIM Note: maturase Location: 451 841 4-451 8645 bp Feature: gene Location: 4518770-4519252 bp Feature: domain Description: Rve Location: 4518797-4519178 bp Feature: domain Description: Rve Location: 451 8797-451 91 78 bp Feature: gene Location: 4519385-4519687 bp Feature: domain Description: DDE_Tnp_1_2 Location: 4519415-4519664 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 451 941 5-451 9664 bp Feature: gene Location: 4558992-4559888 bp Feature: domain Description: LysR Location: 4558995-4559868 bp Feature: domain Description: LysR Location: 4558995-4559868 bp Feature: gene Location: 4559981-4560463 bp Feature: domain Description: Rve Location: 4560008-4560389 bp Feature: domain Description: Rve Location: 4560008-4560389 bp Feature: gene Location: 4560502-4561908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4560853-4561510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4560853-4561 51 0 bp Feature: domain Description: GIIM Note: maturase Location: 4561591-4561822 bp Feature: domain Description: GIIM Note: maturase Location: 4561 591 -4561 822 bp Feature: gene Location: 4561876-4562172 bp Feature: domain Description: Rve Location: 4561897-4562119 bp Feature: domain Description: Rve Location: 4561 897-45621 1 9 bp Feature: gene Location: 4562371-4562547 bp Feature: gene Location: 4562657-4563916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4562861-4563518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4562861 -456351 8 bp Feature: domain Description: GIIM Note: maturase Location: 4563599-4563830 bp Feature: domain Description: GIIM Note: maturase Location: 4563599-4563830 bp Feature: gene Location: 4564383-4564706 bp Feature: domain Description: Rve Location: 4564404-4564599 bp Feature: domain Description: Rve Location: 4564404-4564599 bp Feature: gene Location: 4564866-4565567 bp Feature: domain Description: Rve Location: 4564887-4565493 bp Feature: domain Description: Rve Location: 4564887-4565493 bp Feature: gene Location: 4565682-4566941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4565886-4566543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4565886-4566543 bp Feature: domain Description: GIIM Note: maturase Location: 4566624-4566855 bp Feature: domain Description: GIIM Note: maturase Location: 4566624-4566855 bp Feature: gene Location: 4566980-4567462 bp Feature: domain Description: Rve Location: 4567007-4567388 bp Feature: domain Description: Rve Location: 4567007-4567388 bp Feature: gene Location: 4567555-4568451 bp Feature: domain Description: LysR Location: 4567558-4568431 bp Feature: domain Description: LysR Location: 4567558-4568431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, Tas (COG0667), Rve (COG3316), GIIM (pfam08388), ParAB_family (cd02042), COG3547 (Transposase ), InsE (COG2963), HTH_32 (pfam13565), DDE_3 (pfam13358)
RVT-UG7, PRK12278 (50S ribosomal protein L21), RpmA (COG0211), DDE_Tnp_1_2 (pfam13586), LysR (COG0583)

Seq: VZUL01000003.1 Neorhizobium galegae strain Ng87 unitig_1, whole genome shotgun sequence (1358213 bp)
Overview 1 RT 1: 84094-88022 bp 2 RT 2: 109459-112859 bp 3 RT 3: 344908-347670 bp 4 RT 4: 368430-372299 bp 5 RT 5: 633255-638049 bp 6 RT 6: 1098011-1100750 bp 7 RT 7: 1250798-1253678 bp Neighborhood of RT #1 [84094, 88093] COG3547 RVT-GII GIIM Rve Transposase_20 Neighborhood of RT #2 [109459, 112859] PHA02517 Rve RVT-GII Neighborhood of RT #3 [344908, 347723] Rve RVT-GII GIIM Rve Neighborhood of RT #4 [368430, 372322] PRK06107 RVT-GII GIIM YbgL Neighborhood of RT #5 [633255, 638049] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Neighborhood of RT #6 [1098011, 1101415] Rve RVT-GII GIIM Rve Tnp_DNA_bind Neighborhood of RT #7 [1250798, 1253678] Rve RVT-GII Feature: gene Location: 84094-85137 bp Feature: domain Description: COG3547 Location: 84109-85078 bp Feature: domain Description: COG3547 Location: 84109-85078 bp Feature: gene Location: 85688-85864 bp Feature: gene Location: 85974-87233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86178-86835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86178-86835 bp Feature: domain Description: GIIM Note: maturase Location: 86916-87147 bp Feature: domain Description: GIIM Note: maturase Location: 86916-87147 bp Feature: gene Location: 87272-87589 bp Feature: domain Description: Rve Location: 87299-87539 bp Feature: domain Description: Rve Location: 872 99-87539 bp Feature: gene Location: 87797-88093 bp Feature: domain Description: Transposase_20 Location: 87812-88022 bp Feature: domain Description: Transposase_2 0 Location: 87812 -8802 2 bp Feature: gene Location: 109459-110289 bp Feature: domain Description: PHA02517 Location: 109558-110263 bp Feature: domain Description: PHA02 517 Location: 109558-1102 63 bp Feature: gene Location: 110349-110738 bp Feature: domain Description: Rve Location: 110376-110736 bp Feature: domain Description: Rve Location: 110376-110736 bp Feature: gene Location: 110665-112035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110869-111526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110869-11152 6 bp Feature: gene Location: 112146-112322 bp Feature: gene Location: 112653-112859 bp Feature: gene Location: 344908-345102 bp Feature: gene Location: 345326-345643 bp Feature: domain Description: Rve Location: 345353-345593 bp Feature: domain Description: Rve Location: 345353-345593 bp Feature: gene Location: 345682-346941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345886-346543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345886-346543 bp Feature: domain Description: GIIM Note: maturase Location: 346624-346855 bp Feature: domain Description: GIIM Note: maturase Location: 34662 4-346855 bp Feature: gene Location: 347052-347228 bp Feature: gene Location: 347427-347723 bp Feature: domain Description: Rve Location: 347448-347670 bp Feature: domain Description: Rve Location: 347448-347670 bp Feature: gene Location: 368430-369422 bp Feature: domain Description: PRK06107 Location: 368466-369414 bp Feature: domain Description: PRK06107 Location: 368466-369414 bp Feature: gene Location: 369630-369806 bp Feature: gene Location: 369916-371175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370120-370777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37012 0-370777 bp Feature: domain Description: GIIM Note: maturase Location: 370858-371089 bp Feature: domain Description: GIIM Note: maturase Location: 370858-371089 bp Feature: gene Location: 371214-371498 bp Feature: gene Location: 371543-372322 bp Feature: domain Description: YbgL Location: 371558-372299 bp Feature: domain Description: YbgL Location: 371558-372 2 99 bp Feature: gene Location: 633255-633602 bp Feature: domain Description: TnpB_IS66 Location: 633282-633570 bp Feature: domain Description: TnpB_IS66 Location: 6332 82 -633570 bp Feature: gene Location: 633666-635288 bp Feature: domain Description: LZ_Tnp_IS66 Location: 633795-634044 bp Feature: domain Description: LZ_Tnp_IS66 Location: 633795-634044 bp Feature: domain Description: zf-IS66 Location: 634056-634182 bp Feature: domain Description: zf-IS66 Location: 634056-634182 bp Feature: domain Description: DDE_Tnp_IS66 Location: 634227-635115 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6342 2 7-635115 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 635136-635247 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 635136-6352 47 bp Feature: gene Location: 635631-637160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635904-636639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635904-636639 bp Feature: domain Description: GIIM Note: maturase Location: 636711-636939 bp Feature: domain Description: GIIM Note: maturase Location: 636711-636939 bp Feature: gene Location: 637329-637538 bp Feature: gene Location: 637612-638049 bp Feature: gene Location: 1098011-1098307 bp Feature: domain Description: Rve Location: 1098041-1098254 bp Feature: domain Description: Rve Location: 1098041-10982 54 bp Feature: gene Location: 1098506-1098682 bp Feature: gene Location: 1098792-1100051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098996-1099653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1098996-1099653 bp Feature: domain Description: GIIM Note: maturase Location: 1099734-1099965 bp Feature: domain Description: GIIM Note: maturase Location: 1099734-1099965 bp Feature: gene Location: 1100090-1100437 bp Feature: domain Description: Rve Location: 1100117-1100408 bp Feature: domain Description: Rve Location: 1100117-1100408 bp Feature: gene Location: 1100537-1101415 bp Feature: domain Description: Tnp_DNA_bind Location: 1100579-1100750 bp Feature: domain Description: Tnp_DNA_bind Location: 1100579-1100750 bp Feature: gene Location: 1250798-1251037 bp Feature: gene Location: 1251079-1251558 bp Feature: domain Description: Rve Location: 1251106-1251514 bp Feature: domain Description: Rve Location: 12 51106-12 51514 bp Feature: gene Location: 1251485-1252855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251689-1252346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 51689-12 52 346 bp Feature: gene Location: 1252785-1253141 bp Feature: gene Location: 1253472-1253678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), Rve (COG3316), Transposase_20 (pfam02371), PHA02517 (putative transposase OrfB; Reviewed), PRK06107 (aspartate transaminase), YbgL (COG1540), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Tnp_DNA_bind (pfam14706)