myRT

myRT report for GCA_008806595.1_ASM880659v1

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Seq: VZRB01000019.1 Streptomyces sp. HIT-DPA4 Scaffold19, whole genome shotgun sequence (165447 bp)
Overview 1 RT 1: 124464-129113 bp Neighborhood of RT #1 [124464, 129113] MetF RVT-GII RHH_1 Feature: gene Location: 124464-125231 bp Feature: gene Location: 125998-126777 bp Feature: domain Description: MetF Location: 126007-126766 bp Feature: domain Description: MetF Location: 1 26007-1 26766 bp Feature: gene Location: 127546-128055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127807-127963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27807-1 27963 bp Feature: gene Location: 128160-128507 bp Feature: domain Description: RHH_1 Location: 128367-128475 bp Feature: domain Description: RHH_1 Location: 1 28367-1 28475 bp Feature: gene Location: 128718-129113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MetF (COG0685), RVT-GII, RHH_1 (pfam01402)

Seq: VZRB01000024.1 Streptomyces sp. HIT-DPA4 Scaffold24, whole genome shotgun sequence (134661 bp)
Overview 1 RT 1: 122067-127460 bp Neighborhood of RT #1 [122067, 127540] DDE_3 RVT-GII Intron_maturas2 Peripla_BP_6 LivM Feature: gene Location: 122067-122819 bp Feature: domain Description: DDE_3 Location: 122235-122733 bp Feature: domain Description: DDE_3 Location: 12 2 2 35-12 2 733 bp Feature: gene Location: 123375-123503 bp Feature: gene Location: 123762-124862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123912-124107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3912 -12 4107 bp Feature: domain Description: Intron_maturas2 Location: 124212-124443 bp Feature: domain Description: Intron_maturas2 Location: 12 42 12 -12 4443 bp Feature: gene Location: 125049-126305 bp Feature: domain Description: Peripla_BP_6 Location: 125196-126189 bp Feature: domain Description: Peripla_BP_6 Location: 12 5196-12 6189 bp Feature: gene Location: 126302-127540 bp Feature: domain Description: LivM Location: 126443-127460 bp Feature: domain Description: LivM Location: 12 6443-12 7460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT-GII, Intron_maturas2 (pfam01348), Peripla_BP_6 (pfam13458), LivM (COG4177)

Seq: VZRB01000028.1 Streptomyces sp. HIT-DPA4 Scaffold28, whole genome shotgun sequence (114202 bp)
Overview 1 RT 1: 1-3309 bp Neighborhood of RT #1 [1, 3309] DDE_3 RVT_N RVT-GII GIIM Feature: gene Location: 1-147 bp Feature: domain Description: DDE_3 Location: 7-127 bp Feature: domain Description: DDE_3 Location: 7-127 bp Feature: gene Location: 856-2610 bp Feature: domain Description: RVT_N Location: 892-1129 bp Feature: domain Description: RVT_N Location: 892-1129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189-1846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1189-1846 bp Feature: domain Description: GIIM Note: maturase Location: 1900-2131 bp Feature: domain Description: GIIM Note: maturase Location: 1900-213 1 bp Feature: gene Location: 2714-2845 bp Feature: gene Location: 2884-3309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VZRB01000048.1 Streptomyces sp. HIT-DPA4 Scaffold48, whole genome shotgun sequence (41149 bp)
Overview 1 RT 1: 26886-35028 bp Neighborhood of RT #1 [26886, 35045] methyltr_grsp RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM RVT-GII GIIM KOG4178 Feature: gene Location: 26886-28085 bp Feature: domain Description: methyltr_grsp Location: 26940-28041 bp Feature: domain Description: methyltr_grsp Location: 2694 0-2804 1 bp Feature: gene Location: 28119-28346 bp Feature: gene Location: 28523-29140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28718-29108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28718-29108 bp Feature: gene Location: 29183-29452 bp Feature: gene Location: 29519-30457 bp Feature: domain Description: Resolvase Location: 29582-30014 bp Feature: domain Description: Resolvase Location: 29582-30014 bp Feature: domain Description: Recombinase Location: 30101-30296 bp Feature: domain Description: Recombinase Location: 30101-30296 bp Feature: gene Location: 30175-31080 bp Feature: domain Description: Zn_ribbon_recom Location: 30505-30694 bp Feature: domain Description: Zn_ribbon_recom Location: 30505-30694 bp Feature: gene Location: 31346-32629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31568-32234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31568-32234 bp Feature: domain Description: GIIM Note: maturase Location: 32312-32531 bp Feature: domain Description: GIIM Note: maturase Location: 32312-32531 bp Feature: gene Location: 32754-33266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32760-32841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32760-3284 1 bp Feature: domain Description: GIIM Note: maturase Location: 32910-33144 bp Feature: domain Description: GIIM Note: maturase Location: 32910-3314 4 bp Feature: gene Location: 33360-33851 bp Feature: gene Location: 34095-35045 bp Feature: domain Description: KOG4178 Location: 34131-35028 bp Feature: domain Description: KOG4 178 Location: 34 131-35028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT methyltr_grsp (TIGR04188), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), KOG4178 (KOG4178, Soluble epoxide hydrolase )

Seq: VZRB01000058.1 Streptomyces sp. HIT-DPA4 Scaffold58, whole genome shotgun sequence (31521 bp)
Overview 1 RT 1: 30089-31411 bp Neighborhood of RT #1 [30089, 31443] HTH_17 HTH_17 excise excise RVT-GII Feature: gene Location: 30089-30541 bp Feature: domain Description: HTH_17 Location: 30164-30275 bp Feature: domain Description: HTH_17 Location: 30164-30275 bp Feature: domain Description: HTH_17 Location: 30380-30491 bp Feature: domain Description: HTH_17 Location: 30380-30491 bp Feature: gene Location: 30576-31046 bp Feature: domain Description: excise Location: 30603-30699 bp Feature: domain Description: excise Location: 30603-30699 bp Feature: domain Description: excise Location: 30834-30924 bp Feature: domain Description: excise Location: 30834-30924 bp Feature: gene Location: 31054-31443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31057-31411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3105 7-31411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), excise (TIGR01764), RVT-GII

Seq: VZRB01000060.1 Streptomyces sp. HIT-DPA4 Scaffold60, whole genome shotgun sequence (27117 bp)
Overview 1 RT 1: 575-3574 bp Neighborhood of RT #1 [575, 3630] RVT-GII GIIM Y1_Tnp InsQ Feature: gene Location: 575-1747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 83-1298 bp Feature: domain Description: GIIM Note: maturase Location: 1352-1583 bp Feature: domain Description: GIIM Note: maturase Location: 1352-1583 bp Feature: gene Location: 1999-2955 bp Feature: domain Description: Y1_Tnp Location: 2584-2941 bp Feature: domain Description: Y1_Tnp Location: 2584-2941 bp Feature: gene Location: 2443-3630 bp Feature: domain Description: InsQ Location: 2458-3574 bp Feature: domain Description: InsQ Location: 2458-3574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Y1_Tnp (pfam01797), InsQ (COG0675)

Seq: VZRB01000067.1 Streptomyces sp. HIT-DPA4 Scaffold67, whole genome shotgun sequence (19744 bp)
Overview 1 RT 1: 10-1802 bp Neighborhood of RT #1 [10, 1840] RVT-GII InsE Feature: gene Location: 10-801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301-649 bp Feature: gene Location: 621-848 bp Feature: gene Location: 1511-1840 bp Feature: domain Description: InsE Location: 1523-1802 bp Feature: domain Description: InsE Location: 1523-1802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)

Seq: VZRB01000085.1 Streptomyces sp. HIT-DPA4 Scaffold85, whole genome shotgun sequence (3807 bp)
Overview 1 RT 1: 925-3599 bp Neighborhood of RT #1 [925, 3697] RVT-GII Intron_maturas2 HNHc RVT-GII GIIM Feature: gene Location: 925-1647 bp Feature: gene Location: 1526-1894 bp Feature: gene Location: 2055-2966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103-2232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103-2232 bp Feature: domain Description: Intron_maturas2 Location: 2337-2568 bp Feature: domain Description: Intron_maturas2 Location: 2337-2568 bp Feature: domain Description: HNHc Note: nucleases Location: 2736-2925 bp Feature: domain Description: HNHc Note: nucleases Location: 2736-2925 bp Feature: gene Location: 3005-3697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3077-3296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3077-3296 bp Feature: domain Description: GIIM Note: maturase Location: 3374-3599 bp Feature: domain Description: GIIM Note: maturase Location: 3374-3599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), GIIM (pfam08388)