myRT

myRT report for GCA_008830725.1_ASM883072v1

Download annotations/find similar RTs

Seq: WARF01000010.1 Klebsiella pneumoniae strain 39929 contig_10, whole genome shotgun sequence (103304 bp)
Overview 1 RT 1: 64481-71349 bp Neighborhood of RT #1 [64481, 71351] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 64481-65209 bp Feature: domain Description: FimC Location: 64529-65192 bp Feature: domain Description: FimC Location: 64529-651 92 bp Feature: gene Location: 65241-67850 bp Feature: domain Description: FimD Location: 65298-67839 bp Feature: domain Description: FimD Location: 65298-67839 bp Feature: gene Location: 67850-69928 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 68258-68702 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 68258-68702 bp Feature: gene Location: 69985-70425 bp Feature: domain Description: Integrase_1 Location: 69991-70207 bp Feature: domain Description: Integrase_1 Location: 69991 -70207 bp Feature: gene Location: 70686-71351 bp Feature: domain Description: INT_P4_C Location: 70791-71349 bp Feature: domain Description: INT_P4_C Location: 70791 -71 349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: WARF01000045.1 Klebsiella pneumoniae strain 39929 contig_45, whole genome shotgun sequence (1909 bp)
Overview 1 RT 1: 1-1459 bp Neighborhood of RT #1 [1, 1851] RVT-GII Feature: gene Location: 1-210 bp Feature: gene Location: 364-1851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WARF01000048.1 Klebsiella pneumoniae strain 39929 contig_48, whole genome shotgun sequence (13938 bp)
Overview 1 RT 1: 8650-13674 bp Neighborhood of RT #1 [8650, 13674] RVT-GII HTH_28 rve Feature: gene Location: 8650-9159 bp Feature: gene Location: 9168-9983 bp Feature: gene Location: 9918-11405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10323-11013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 23 -11013 bp Feature: gene Location: 11598-13001 bp Feature: domain Description: HTH_28 Location: 11646-11787 bp Feature: domain Description: HTH_28 Location: 11646-11787 bp Feature: domain Description: rve Location: 12027-12393 bp Feature: domain Description: rve Location: 12027-123 93 bp Feature: gene Location: 13030-13674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), rve (pfam00665)