myRT

myRT report for GCA_008867625.1_ASM886762v1

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Seq: VSKG01000019.1 Klebsiella pneumoniae strain 20190026 20190026_S37_L001_R1_001_(paired)_contig_19, whole genome shotgun sequence (80697 bp)
Overview 1 RT 1: 32739-39592 bp Neighborhood of RT #1 [32739, 39609] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32739-33404 bp Feature: domain Description: INT_P4_C Location: 32844-33402 bp Feature: domain Description: INT_P4_C Location: 32844-33402 bp Feature: gene Location: 33665-34105 bp Feature: domain Description: Integrase_1 Location: 33671-33887 bp Feature: domain Description: Integrase_1 Location: 33671 -33887 bp Feature: gene Location: 34162-36240 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34570-35014 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34570-3501 4 bp Feature: gene Location: 36240-38849 bp Feature: domain Description: FimD Location: 36297-38838 bp Feature: domain Description: FimD Location: 36297-38838 bp Feature: gene Location: 38881-39609 bp Feature: domain Description: FimC Location: 38929-39592 bp Feature: domain Description: FimC Location: 38929-39592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VSKG01000061.1 Klebsiella pneumoniae strain 20190026 20190026_S37_L001_R1_001_(paired)_contig_61, whole genome shotgun sequence (38911 bp)
Overview 1 RT 1: 25504-29586 bp Neighborhood of RT #1 [25504, 29723] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25504-25935 bp Feature: domain Description: PRK10276 Location: 25555-25918 bp Feature: domain Description: PRK102 76 Location: 2 5555-2 5918 bp Feature: gene Location: 26133-26345 bp Feature: gene Location: 26420-27829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26747-27437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6747-2 7437 bp Feature: gene Location: 28078-29049 bp Feature: domain Description: StbA Location: 28081-29026 bp Feature: domain Description: StbA Location: 2 8081-2 902 6 bp Feature: gene Location: 29052-29723 bp Feature: domain Description: Plasmid_stab_B Location: 29067-29274 bp Feature: domain Description: Plasmid_stab_B Location: 2 9067-2 92 74 bp Feature: domain Description: Plasmid_stab_B Location: 29379-29586 bp Feature: domain Description: Plasmid_stab_B Location: 2 9379-2 9586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)