myRT

myRT report for GCA_008867865.1_ASM886786v1

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Seq: VSJU01000015.1 Klebsiella pneumoniae strain 20180246 25-20180246_S4_L001_R1_001_(paired)_contig_15, whole genome shotgun sequence (122477 bp)
Overview 1 RT 1: 112778-119646 bp Neighborhood of RT #1 [112778, 119648] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112778-113506 bp Feature: domain Description: FimC Location: 112826-113489 bp Feature: domain Description: FimC Location: 1 1 2826-1 1 3489 bp Feature: gene Location: 113538-116147 bp Feature: domain Description: FimD Location: 113595-116136 bp Feature: domain Description: FimD Location: 1 1 3595-1 1 61 36 bp Feature: gene Location: 116147-118225 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116555-116999 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6555-1 1 6999 bp Feature: gene Location: 118282-118722 bp Feature: domain Description: Integrase_1 Location: 118288-118504 bp Feature: domain Description: Integrase_1 Location: 1 1 8288-1 1 8504 bp Feature: gene Location: 118983-119648 bp Feature: domain Description: INT_P4_C Location: 119088-119646 bp Feature: domain Description: INT_P4_C Location: 1 1 9088-1 1 9646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: VSJU01000050.1 Klebsiella pneumoniae strain 20180246 25-20180246_S4_L001_R1_001_(paired)_contig_50, whole genome shotgun sequence (15418 bp)
Overview 1 RT 1: 60-4830 bp Neighborhood of RT #1 [60, 4832] RVT-GII dacD SbcB Feature: gene Location: 60-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 465-1155 bp Feature: gene Location: 2064-3233 bp Feature: domain Description: dacD Location: 2073-3228 bp Feature: domain Description: dacD Location: 2 073-32 2 8 bp Feature: gene Location: 3408-4832 bp Feature: domain Description: SbcB Location: 3414-4830 bp Feature: domain Description: SbcB Location: 3414-4830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, dacD (PRK11397), SbcB (COG2925)

Seq: VSJU01000098.1 Klebsiella pneumoniae strain 20180246 25-20180246_S4_L001_R1_001_(paired)_contig_98, whole genome shotgun sequence (5349 bp)
Overview 1 RT 1: 1793-5334 bp Neighborhood of RT #1 [1793, 5334] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1793-2065 bp Feature: domain Description: InsE Location: 1802-2051 bp Feature: domain Description: InsE Location: 1802-2051 bp Feature: gene Location: 2121-2546 bp Feature: domain Description: PHA02517 Location: 2145-2481 bp Feature: domain Description: PHA02517 Location: 2145-2481 bp Feature: gene Location: 3138-4661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3411-4143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 411-4143 bp Feature: domain Description: GIIM Note: maturase Location: 4218-4416 bp Feature: domain Description: GIIM Note: maturase Location: 4218-4416 bp Feature: gene Location: 4826-4984 bp Feature: domain Description: PHA02517 Location: 4829-4949 bp Feature: domain Description: PHA02517 Location: 4829-4949 bp Feature: gene Location: 5203-5334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)