myRT

myRT report for GCA_008867885.1_ASM886788v1

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Seq: VSJT01000155.1 Klebsiella pneumoniae strain 20180603 7-20180603_S37_L001_R1_001_(paired)_contig_155, whole genome shotgun sequence (4044 bp)
Overview 1 RT 1: 489-4030 bp Neighborhood of RT #1 [489, 4030] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 489-761 bp Feature: domain Description: InsE Location: 498-747 bp Feature: domain Description: InsE Location: 498-747 bp Feature: gene Location: 817-1242 bp Feature: domain Description: PHA02517 Location: 841-1177 bp Feature: domain Description: PHA0251 7 Location: 841 -1 1 77 bp Feature: gene Location: 1834-3357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2107-2839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 07-2839 bp Feature: domain Description: GIIM Note: maturase Location: 2914-3112 bp Feature: domain Description: GIIM Note: maturase Location: 291 4-31 1 2 bp Feature: gene Location: 3522-3680 bp Feature: domain Description: PHA02517 Location: 3525-3645 bp Feature: domain Description: PHA0251 7 Location: 3525-3645 bp Feature: gene Location: 3899-4030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VSJT01000023.1 Klebsiella pneumoniae strain 20180603 7-20180603_S37_L001_R1_001_(paired)_contig_23, whole genome shotgun sequence (113158 bp)
Overview 1 RT 1: 93910-100778 bp Neighborhood of RT #1 [93910, 100780] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 93910-94638 bp Feature: domain Description: FimC Location: 93958-94621 bp Feature: domain Description: FimC Location: 93958-9462 1 bp Feature: gene Location: 94670-97279 bp Feature: domain Description: FimD Location: 94727-97268 bp Feature: domain Description: FimD Location: 9472 7-972 68 bp Feature: gene Location: 97279-99357 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 97687-98131 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 97687-98131 bp Feature: gene Location: 99414-99854 bp Feature: domain Description: Integrase_1 Location: 99420-99636 bp Feature: domain Description: Integrase_1 Location: 9942 0-99636 bp Feature: gene Location: 100115-100780 bp Feature: domain Description: INT_P4_C Location: 100220-100778 bp Feature: domain Description: INT_P4_C Location: 1002 2 0-100778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: VSJT01000080.1 Klebsiella pneumoniae strain 20180603 7-20180603_S37_L001_R1_001_(paired)_contig_80, whole genome shotgun sequence (1997 bp)
Overview 1 RT 1: 59-1719 bp Neighborhood of RT #1 [59, 1719] RVT-GII Feature: gene Location: 59-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1151 bp Feature: gene Location: 1552-1719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSJT01000081.1 Klebsiella pneumoniae strain 20180603 7-20180603_S37_L001_R1_001_(paired)_contig_81, whole genome shotgun sequence (5972 bp)
Overview 1 RT 1: 3619-5579 bp Neighborhood of RT #1 [3619, 5971] RVT-GII Feature: gene Location: 3619-3834 bp Feature: gene Location: 4101-4679 bp Feature: gene Location: 4565-5971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4865-5579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 865-5579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII