myRT

myRT report for GCA_008867905.1_ASM886790v1

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Seq: VSJS01000132.1 Klebsiella pneumoniae strain 20180208 16-20180208_S44_L001_R1_001_(paired)_contig_132, whole genome shotgun sequence (30803 bp)
Overview 1 RT 1: 23646-30799 bp Neighborhood of RT #1 [23646, 30801] FimC FimD RVT-UG4 Integrase_1 PRK09692 Feature: gene Location: 23646-24374 bp Feature: domain Description: FimC Location: 23694-24357 bp Feature: domain Description: FimC Location: 23694-24357 bp Feature: gene Location: 24406-27015 bp Feature: domain Description: FimD Location: 24463-27004 bp Feature: domain Description: FimD Location: 24463-27004 bp Feature: gene Location: 27015-29093 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 27423-27867 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 27423-27867 bp Feature: gene Location: 29150-29590 bp Feature: domain Description: Integrase_1 Location: 29156-29372 bp Feature: domain Description: Integrase_1 Location: 291 56-29372 bp Feature: gene Location: 29851-30801 bp Feature: domain Description: PRK09692 Location: 29878-30799 bp Feature: domain Description: PRK09692 Location: 29878-30799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), PRK09692 (Integrase; provisional)

Seq: VSJS01000154.1 Klebsiella pneumoniae strain 20180208 16-20180208_S44_L001_R1_001_(paired)_contig_154, whole genome shotgun sequence (5472 bp)
Overview 1 RT 1: 139-3287 bp Neighborhood of RT #1 [139, 3352] RVT-GII GIIM PHA02517 Feature: gene Location: 139-270 bp Feature: gene Location: 519-725 bp Feature: gene Location: 812-2335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1085-1817 bp Feature: domain Description: GIIM Note: maturase Location: 1892-2090 bp Feature: domain Description: GIIM Note: maturase Location: 1892 -2 090 bp Feature: gene Location: 2289-2714 bp Feature: gene Location: 2927-3352 bp Feature: domain Description: PHA02517 Location: 2951-3287 bp Feature: domain Description: PHA02 517 Location: 2 951-32 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: VSJS01000079.1 Klebsiella pneumoniae strain 20180208 16-20180208_S44_L001_R1_001_(paired)_contig_79, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 2-1463 bp Neighborhood of RT #1 [2, 1855] RVT-GII Feature: gene Location: 2-214 bp Feature: gene Location: 368-1855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773 -1463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII