myRT

myRT report for GCA_008867915.1_ASM886791v1

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Seq: VSJR01000028.1 Klebsiella pneumoniae strain 2014081 14-ST15-OXA-48_trimmed_(paired)_contig_28, whole genome shotgun sequence (1909 bp)
Overview 1 RT 1: 1-1459 bp Neighborhood of RT #1 [1, 1851] RVT-GII Feature: gene Location: 1-210 bp Feature: gene Location: 364-1851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 769-1 459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSJR01000004.1 Klebsiella pneumoniae strain 2014081 14-ST15-OXA-48_trimmed_(paired)_contig_4, whole genome shotgun sequence (152667 bp)
Overview 1 RT 1: 33020-39873 bp Neighborhood of RT #1 [33020, 39890] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 33020-33685 bp Feature: domain Description: INT_P4_C Location: 33125-33683 bp Feature: domain Description: INT_P4_C Location: 3312 5-33683 bp Feature: gene Location: 33946-34386 bp Feature: domain Description: Integrase_1 Location: 33952-34168 bp Feature: domain Description: Integrase_1 Location: 33952 -34168 bp Feature: gene Location: 34443-36521 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34851-35295 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 34851-352 95 bp Feature: gene Location: 36521-39130 bp Feature: domain Description: FimD Location: 36578-39119 bp Feature: domain Description: FimD Location: 36578-39119 bp Feature: gene Location: 39162-39890 bp Feature: domain Description: FimC Location: 39210-39873 bp Feature: domain Description: FimC Location: 392 10-39873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)