myRT

myRT report for GCA_008923395.1_ASM892339v1

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Seq: WBSY01000135.1 Escherichia coli strain C2_blaTEM_MG NODE_135_length_7014_cov_5.7682_ID_8839, whole genome shotgun sequence (7014 bp)
Overview 1 RT 1: 2536-6072 bp Neighborhood of RT #1 [2536, 6113] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 2536-2808 bp Feature: domain Description: PRK09678 Location: 2545-2701 bp Feature: domain Description: PRK09678 Location: 2545-2701 bp Feature: gene Location: 3436-4422 bp Feature: gene Location: 4424-5356 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4526-5120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4526-51 20 bp Feature: gene Location: 5382-5627 bp Feature: gene Location: 5811-6113 bp Feature: domain Description: Arm-DNA-bind_3 Location: 5820-6072 bp Feature: domain Description: Arm-DNA-bind_3 Location: 5820-6072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: WBSY01000218.1 Escherichia coli strain C2_blaTEM_MG NODE_218_length_5554_cov_3.87657_ID_11325, whole genome shotgun sequence (5554 bp)
Overview 1 RT 1: 3-2524 bp Neighborhood of RT #1 [3, 2532] RVT-GII GIIM YesM Feature: gene Location: 3-206 bp Feature: gene Location: 199-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05-487 bp Feature: domain Description: GIIM Note: maturase Location: 535-715 bp Feature: domain Description: GIIM Note: maturase Location: 535-715 bp Feature: gene Location: 1042-1230 bp Feature: gene Location: 1270-2532 bp Feature: domain Description: YesM Location: 1783-2524 bp Feature: domain Description: YesM Location: 1783-2 52 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: WBSY01000442.1 Escherichia coli strain C2_blaTEM_MG NODE_442_length_3484_cov_9.24538_ID_39180, whole genome shotgun sequence (3484 bp)
Overview 1 RT 1: 2-2998 bp Neighborhood of RT #1 [2, 3165] PHA02517 RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 2-142 bp Feature: domain Description: PHA02517 Location: 8-77 bp Feature: domain Description: PHA02517 Location: 8-77 bp Feature: gene Location: 734-2257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-1739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007-173 9 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: domain Description: GIIM Note: maturase Location: 1814-2012 bp Feature: gene Location: 2410-2586 bp Feature: domain Description: PHA02517 Location: 2413-2515 bp Feature: domain Description: PHA02517 Location: 2413 -2515 bp Feature: gene Location: 2752-3165 bp Feature: domain Description: COG2085 Location: 2851-2998 bp Feature: domain Description: COG2085 Location: 2851-2998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme )