myRT

myRT report for GCA_008923805.1_ASM892380v1

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Seq: WBOY01000024.1 Bacillus endophyticus strain CH148_4T scaffold24.1, whole genome shotgun sequence (87569 bp)
Overview 1 RT 1: 65808-69749 bp 2 RT 2: 80512-85453 bp Neighborhood of RT #1 [65808, 69749] RVT_N RVT-GII GIIM Neighborhood of RT #2 [80512, 86691] PinE DUF2513 RVT-UG14 met_A_Alw26 Feature: gene Location: 65808-65936 bp Feature: gene Location: 66146-66385 bp Feature: gene Location: 66811-68460 bp Feature: domain Description: RVT_N Location: 66859-67102 bp Feature: domain Description: RVT_N Location: 66859-671 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67159-67819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 59-6781 9 bp Feature: domain Description: GIIM Note: maturase Location: 67885-68119 bp Feature: domain Description: GIIM Note: maturase Location: 67885-681 1 9 bp Feature: gene Location: 69043-69303 bp Feature: gene Location: 69522-69749 bp Feature: gene Location: 80512-80916 bp Feature: domain Description: PinE Location: 80542-80854 bp Feature: domain Description: PinE Location: 80542-80854 bp Feature: gene Location: 81174-81548 bp Feature: domain Description: DUF2513 Location: 81180-81411 bp Feature: domain Description: DUF251 3 Location: 81 1 80-81 41 1 bp Feature: gene Location: 81838-83397 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 82189-82546 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 821 89-82546 bp Feature: gene Location: 83654-84898 bp Feature: gene Location: 84895-86691 bp Feature: domain Description: met_A_Alw26 Location: 85078-85453 bp Feature: domain Description: met_A_Alw26 Location: 85078-85453 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PinE (COG1961), DUF2513 (pfam10711), RVT-UG14, met_A_Alw26 (TIGR02987)

Seq: WBOY01000003.1 Bacillus endophyticus strain CH148_4T scaffold3.1, whole genome shotgun sequence (497734 bp)
Overview 1 RT 1: 5-3720 bp Neighborhood of RT #1 [5, 3728] AppF RVT-GII Intron_maturas2 HNHc dppF Feature: gene Location: 5-214 bp Feature: domain Description: AppF Location: 17-206 bp Feature: domain Description: AppF Location: 17-2 06 bp Feature: gene Location: 310-2124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574-1402 bp Feature: domain Description: Intron_maturas2 Location: 1480-1774 bp Feature: domain Description: Intron_maturas2 Location: 1480-1774 bp Feature: domain Description: HNHc Note: nucleases Location: 1921-2098 bp Feature: domain Description: HNHc Note: nucleases Location: 192 1-2 098 bp Feature: gene Location: 2463-2702 bp Feature: gene Location: 2940-3728 bp Feature: domain Description: dppF Location: 3024-3720 bp Feature: domain Description: dppF Location: 302 4-372 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AppF (COG4608), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), dppF (PRK11308)

Seq: WBOY01000031.1 Bacillus endophyticus strain CH148_4T scaffold31.1, whole genome shotgun sequence (22612 bp)
Overview 1 RT 1: 1-4252 bp Neighborhood of RT #1 [1, 4287] RVT_N RVT-GII GIIM BaeS Feature: gene Location: 1-372 bp Feature: gene Location: 389-1630 bp Feature: domain Description: RVT_N Location: 485-728 bp Feature: domain Description: RVT_N Location: 485-728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1445 bp Feature: domain Description: GIIM Note: maturase Location: 1511-1619 bp Feature: domain Description: GIIM Note: maturase Location: 1511-1619 bp Feature: gene Location: 2491-2829 bp Feature: gene Location: 2935-4287 bp Feature: domain Description: BaeS Location: 3646-4252 bp Feature: domain Description: BaeS Location: 3 646-4252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), BaeS (COG0642)