myRT

myRT report for GCA_008932745.1_ASM893274v1

Download annotations/find similar RTs

Seq: WBWU01000010.1 Ochrobactrum anthropi strain LMG 3298 OAN3298_10_51k_38, whole genome shotgun sequence (51145 bp)
Overview 1 RT 1: 6025-10067 bp Neighborhood of RT #1 [6025, 10067] Porin_2 RVT-GII GIIM Feature: gene Location: 6025-6195 bp Feature: gene Location: 6505-7674 bp Feature: domain Description: Porin_2 Location: 6577-7627 bp Feature: domain Description: Porin_2 Location: 6577-7627 bp Feature: gene Location: 7965-9398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8334-8952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8334-8952 bp Feature: domain Description: GIIM Note: maturase Location: 9000-9225 bp Feature: domain Description: GIIM Note: maturase Location: 9000-9225 bp Feature: gene Location: 9193-9717 bp Feature: gene Location: 9876-10067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Porin_2 (pfam02530), RVT-GII, GIIM (pfam08388)

Seq: WBWU01000001.1 Ochrobactrum anthropi strain LMG 3298 OAN3298_1_1179k_54, whole genome shotgun sequence (1179809 bp)
Overview 1 RT 1: 1147288-1152708 bp Neighborhood of RT #1 [1147288, 1152708] SR_Res_par HTH_7 RVT-UG8 RVT-UG3 Feature: gene Location: 1147288-1147917 bp Feature: domain Description: SR_Res_par Location: 1147312-1147744 bp Feature: domain Description: SR_Res_par Location: 1147312 -1147744 bp Feature: domain Description: HTH_7 Location: 1147780-1147885 bp Feature: domain Description: HTH_7 Location: 1147780-1147885 bp Feature: gene Location: 1148072-1148233 bp Feature: gene Location: 1148247-1150268 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1148778-1149222 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1148778-11492 2 2 bp Feature: gene Location: 1150261-1151511 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1150543-1151029 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1150543-115102 9 bp Feature: gene Location: 1151651-1151980 bp Feature: gene Location: 1151992-1152708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_Res_par (cd03767), HTH_7 (pfam02796), RVT-UG8, RVT-UG3

Seq: WBWU01000002.1 Ochrobactrum anthropi strain LMG 3298 OAN3298_2_1133k_52, whole genome shotgun sequence (1133714 bp)
Overview 1 RT 1: 566908-570643 bp Neighborhood of RT #1 [566908, 570648] ASCH_yqfb_like ASCH_yqfb_like beta_clamp RVT-DGRs PHA00652 Feature: gene Location: 566908-567735 bp Feature: domain Description: ASCH_yqfb_like Location: 566923-566992 bp Feature: domain Description: ASCH_yqfb_like Location: 566923 -566992 bp Feature: domain Description: ASCH_yqfb_like Location: 567397-567475 bp Feature: domain Description: ASCH_yqfb_like Location: 5673 97-567475 bp Feature: gene Location: 567735-568919 bp Feature: domain Description: beta_clamp Location: 567891-568854 bp Feature: domain Description: beta_clamp Location: 567891-568854 bp Feature: gene Location: 568916-569956 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 569129-569723 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 569129-569723 bp Feature: gene Location: 570033-570209 bp Feature: gene Location: 570271-570648 bp Feature: domain Description: PHA00652 Location: 570304-570643 bp Feature: domain Description: PHA00652 Location: 5703 04-570643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ASCH_yqfb_like (cd06552), beta_clamp (cl29549), RVT-DGRs, PHA00652 (hypothetical protein)

Seq: WBWU01000008.1 Ochrobactrum anthropi strain LMG 3298 OAN3298_8_129k_57, whole genome shotgun sequence (129702 bp)
Overview 1 RT 1: 84-4483 bp Neighborhood of RT #1 [84, 4483] HTH_XRE RVT-UG12 Feature: gene Location: 84-752 bp Feature: gene Location: 1022-1261 bp Feature: domain Description: HTH_XRE Location: 1043-1187 bp Feature: domain Description: HTH_XRE Location: 104 3-1187 bp Feature: gene Location: 1427-3100 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1805-2243 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1805-224 3 bp Feature: gene Location: 3348-4223 bp Feature: gene Location: 4334-4483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-UG12