myRT

myRT report for GCA_008933285.1_ASM893328v1

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Seq: WBVH01000306.1 Candidatus Brocadia sp. isolate SB37 contig_11941, whole genome shotgun sequence (3078 bp)
Overview 1 RT 1: 2-3040 bp Neighborhood of RT #1 [2, 3075] CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III SrmB Feature: gene Location: 2-2746 bp Feature: domain Description: CRISPR_Cas6 Location: 446-785 bp Feature: domain Description: CRISPR_Cas6 Location: 446-785 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1004-1700 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 004-1 700 bp Feature: domain Description: Cas1_I-II-III Location: 1781-2699 bp Feature: domain Description: Cas1 _I-II-III Location: 1 781 -2699 bp Feature: gene Location: 2920-3075 bp Feature: domain Description: SrmB Location: 2926-3040 bp Feature: domain Description: SrmB Location: 2926-3040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), SrmB (COG0513)

Seq: WBVH01000598.1 Candidatus Brocadia sp. isolate SB37 contig_26134, whole genome shotgun sequence (1851 bp)
Overview 1 RT 1: 1-1816 bp Neighborhood of RT #1 [1, 1824] RVT-GII IbpA IbpA Feature: gene Location: 1-138 bp Feature: gene Location: 293-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299-395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 99-395 bp Feature: gene Location: 951-1400 bp Feature: domain Description: IbpA Location: 1008-1389 bp Feature: domain Description: IbpA Location: 1008-1389 bp Feature: gene Location: 1420-1824 bp Feature: domain Description: IbpA Location: 1507-1816 bp Feature: domain Description: IbpA Location: 1507-1816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IbpA (COG0071)

Seq: WBVH01000009.1 Candidatus Brocadia sp. isolate SB37 contig_2984, whole genome shotgun sequence (8782 bp)
Overview 1 RT 1: 788-2833 bp Neighborhood of RT #1 [788, 2871] RVT-GII RVT-GII RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 788-919 bp Feature: gene Location: 1041-1328 bp Feature: gene Location: 1386-1610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1410-1584 bp Feature: gene Location: 1682-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1691-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1691-1826 bp Feature: gene Location: 1848-2156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1863-2031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1863 -203 1 bp Feature: gene Location: 2163-2411 bp Feature: domain Description: GIIM Note: maturase Location: 2166-2325 bp Feature: domain Description: GIIM Note: maturase Location: 2166-23 25 bp Feature: gene Location: 2626-2871 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2632-2833 bp Feature: domain Description: DDE_Tnp_1_4 Location: 263 2-283 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)