myRT

myRT report for GCA_008973575.1_ASM897357v1

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Seq: WACK01000002.1 Shigella flexneri strain AR-0421 plasmid pAR-0421-1 contig2_AR-0421, whole genome shotgun sequence (70072 bp)
Overview 1 RT 1: 29350-33250 bp Neighborhood of RT #1 [29350, 34371] PRK13732 RVT-GII GIIM DUF905 Spo0J Feature: gene Location: 29350-29490 bp Feature: gene Location: 29516-30043 bp Feature: domain Description: PRK13732 Location: 29519-30041 bp Feature: domain Description: PRK1 3732 Location: 2951 9-30041 bp Feature: gene Location: 30607-31944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30910-31543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3091 0-31 543 bp Feature: domain Description: GIIM Note: maturase Location: 31615-31837 bp Feature: domain Description: GIIM Note: maturase Location: 31 61 5-31 837 bp Feature: gene Location: 32107-32340 bp Feature: domain Description: DUF905 Location: 32137-32335 bp Feature: domain Description: DUF905 Location: 321 37-32335 bp Feature: gene Location: 32404-34371 bp Feature: domain Description: Spo0J Location: 32512-33250 bp Feature: domain Description: Spo0J Location: 3251 2-33250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, GIIM (pfam08388), DUF905 (pfam06006), Spo0J (COG1475)

Seq: WACK01000003.1 Shigella flexneri strain AR-0421 plasmid pAR-0421-2 contig3_AR-0421, whole genome shotgun sequence (185215 bp)
Overview 1 RT 1: 23352-26983 bp Neighborhood of RT #1 [23352, 26983] RVT-GII GIIM PRK05097 Feature: gene Location: 23352-23603 bp Feature: gene Location: 23889-24185 bp Feature: gene Location: 24212-25633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24569-25184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4569-2 5184 bp Feature: domain Description: GIIM Note: maturase Location: 25238-25466 bp Feature: domain Description: GIIM Note: maturase Location: 2 52 38-2 5466 bp Feature: gene Location: 25770-26144 bp Feature: domain Description: PRK05097 Location: 25872-26115 bp Feature: domain Description: PRK05097 Location: 2 5872 -2 6115 bp Feature: gene Location: 26258-26983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK05097 (macrodomain Ter protein MatP)

Seq: WACK01000004.1 Shigella flexneri strain AR-0421 plasmid pAR-0421-3 contig4_AR-0421, whole genome shotgun sequence (222066 bp)
Overview 1 RT 1: 564-3265 bp 2 RT 2: 97583-100236 bp Neighborhood of RT #1 [564, 3285] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Neighborhood of RT #2 [97583, 100236] COG3547 RVT-GII GIIM Feature: gene Location: 564-719 bp Feature: gene Location: 745-1116 bp Feature: domain Description: GIIM Note: maturase Location: 823-1042 bp Feature: domain Description: GIIM Note: maturase Location: 823 -1042 bp Feature: gene Location: 1124-1927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-1919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-1919 bp Feature: gene Location: 1940-2140 bp Feature: domain Description: Tra5 Location: 1949-2123 bp Feature: domain Description: Tra5 Location: 1949-2123 bp Feature: gene Location: 2536-3285 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2611-3265 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2611-3 265 bp Feature: gene Location: 97583-98068 bp Feature: domain Description: COG3547 Location: 97601-98054 bp Feature: domain Description: COG3 547 Location: 97601-98054 bp Feature: gene Location: 98164-98331 bp Feature: gene Location: 98357-99574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98543-99197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98543 -99197 bp Feature: domain Description: GIIM Note: maturase Location: 99275-99497 bp Feature: domain Description: GIIM Note: maturase Location: 99275-99497 bp Feature: gene Location: 99585-99968 bp Feature: gene Location: 100042-100236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397), GIIM (pfam08388), COG3547 (Transposase )

Seq: WACK01000001.1 Shigella flexneri strain AR-0421 contig1_AR-0421, whole genome shotgun sequence (2888666 bp)
Overview 1 RT 1: 478874-484806 bp 2 RT 2: 1500068-1504523 bp 3 RT 3: 1752329-1759745 bp 4 RT 4: 1883948-1888997 bp 5 RT 5: 2381477-2386432 bp Neighborhood of RT #1 [478874, 484814] ubiC ubiA RVT-GII GIIM PlsB Neighborhood of RT #2 [1500068, 1504525] rpmA RVT-GII GIIM EamA EamA obgE Neighborhood of RT #3 [1752329, 1759747] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Neighborhood of RT #4 [1883948, 1888997] PRK08993 RVT-GII GIIM SP Neighborhood of RT #5 [2381477, 2386432] PRK07967 RVT-GII GIIM PRK12382 Feature: gene Location: 478874-479371 bp Feature: domain Description: ubiC Location: 478877-479369 bp Feature: domain Description: ubiC Location: 4 78877-4 79369 bp Feature: gene Location: 479384-480256 bp Feature: domain Description: ubiA Location: 479405-480245 bp Feature: domain Description: ubiA Location: 4 794 05-4 8024 5 bp Feature: gene Location: 480330-481751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480687-481302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 80687-4 81302 bp Feature: domain Description: GIIM Note: maturase Location: 481356-481584 bp Feature: domain Description: GIIM Note: maturase Location: 4 81356-4 81584 bp Feature: gene Location: 481901-482071 bp Feature: gene Location: 482331-484814 bp Feature: domain Description: PlsB Location: 482394-484806 bp Feature: domain Description: PlsB Location: 4 82394 -4 84 806 bp Feature: gene Location: 1500068-1500325 bp Feature: domain Description: rpmA Location: 1500071-1500314 bp Feature: domain Description: rpmA Location: 1500071-1500314 bp Feature: gene Location: 1500489-1500785 bp Feature: gene Location: 1500812-1502233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1501169-1501784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1501169-1501784 bp Feature: domain Description: GIIM Note: maturase Location: 1501838-1502066 bp Feature: domain Description: GIIM Note: maturase Location: 1501838-1502066 bp Feature: gene Location: 1502372-1503337 bp Feature: domain Description: EamA Location: 1502393-1502798 bp Feature: domain Description: EamA Location: 1502393-1502798 bp Feature: domain Description: EamA Location: 1502849-1503245 bp Feature: domain Description: EamA Location: 150284 9-150324 5 bp Feature: gene Location: 1503353-1504525 bp Feature: domain Description: obgE Location: 1503356-1504523 bp Feature: domain Description: obgE Location: 1503356-1504 523 bp Feature: gene Location: 1752329-1752457 bp Feature: gene Location: 1752547-1752786 bp Feature: domain Description: PHA02517 Location: 1752550-1752721 bp Feature: domain Description: PHA02517 Location: 1752550-1752721 bp Feature: gene Location: 1753378-1754901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753651-1754383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753651-1754 383 bp Feature: domain Description: GIIM Note: maturase Location: 1754458-1754656 bp Feature: domain Description: GIIM Note: maturase Location: 1754 4 58-1754 656 bp Feature: gene Location: 1755078-1755464 bp Feature: domain Description: PHA02517 Location: 1755081-1755462 bp Feature: domain Description: PHA02517 Location: 1755081-17554 62 bp Feature: gene Location: 1755629-1759747 bp Feature: domain Description: ESPR Location: 1755632-1755701 bp Feature: domain Description: ESPR Location: 1755632-1755701 bp Feature: domain Description: Peptidase_S6 Location: 1755782-1757954 bp Feature: domain Description: Peptidase_S6 Location: 1755782-1757954 bp Feature: domain Description: autotrans_barl Location: 1758518-1759745 bp Feature: domain Description: autotrans_barl Location: 1758518-175974 5 bp Feature: gene Location: 1883948-1884709 bp Feature: domain Description: PRK08993 Location: 1883951-1884707 bp Feature: domain Description: PRK08993 Location: 1883951-1884 707 bp Feature: gene Location: 1884864-1885160 bp Feature: gene Location: 1885187-1886608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1885544-1886159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188554 4 -1886159 bp Feature: domain Description: GIIM Note: maturase Location: 1886213-1886441 bp Feature: domain Description: GIIM Note: maturase Location: 1886213-18864 4 1 bp Feature: gene Location: 1886944-1888362 bp Feature: domain Description: SP Location: 1886962-1888315 bp Feature: domain Description: SP Location: 1886962-1888315 bp Feature: gene Location: 1888794-1888997 bp Feature: gene Location: 2381477-2382718 bp Feature: domain Description: PRK07967 Location: 2381480-2382692 bp Feature: domain Description: PRK07967 Location: 23814 80-2382692 bp Feature: gene Location: 2382920-2383216 bp Feature: gene Location: 2383243-2384664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383600-2384215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383600-2384 215 bp Feature: domain Description: GIIM Note: maturase Location: 2384269-2384497 bp Feature: domain Description: GIIM Note: maturase Location: 2384 269-2384 4 97 bp Feature: gene Location: 2384893-2386071 bp Feature: domain Description: PRK12382 Location: 2384896-2386069 bp Feature: domain Description: PRK12382 Location: 2384 896-2386069 bp Feature: gene Location: 2386268-2386432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ubiC (PRK11655), ubiA (PRK13595), RVT-GII, GIIM (pfam08388), PlsB (COG2937), rpmA (PRK05435), EamA (pfam00892), obgE (PRK12299), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018)
Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PRK08993 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD), SP (TIGR00879), PRK07967 (beta-ketoacyl-ACP synthase I), PRK12382 (putative transporter; Provisional)

Seq: WACK01000005.1 Shigella flexneri strain AR-0421 contig5_AR-0421, whole genome shotgun sequence (1210233 bp)
Overview 1 RT 1: 466693-470621 bp 2 RT 2: 479264-482759 bp 3 RT 3: 874000-877508 bp Neighborhood of RT #1 [466693, 470647] Phage_holin_2_1 RVT-GII GIIM Phage_antitermQ Neighborhood of RT #2 [479264, 482824] DUF1133 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [874000, 877516] PHA02517 RVT-GII GIIM PHA02517 Inovirus_Gp2 Feature: gene Location: 466693-467322 bp Feature: gene Location: 467326-467541 bp Feature: domain Description: Phage_holin_2_1 Location: 467341-467527 bp Feature: domain Description: Phage_holin_2_1 Location: 467341-4675 27 bp Feature: gene Location: 468300-469721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468657-469272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46865 7-469272 bp Feature: domain Description: GIIM Note: maturase Location: 469326-469554 bp Feature: domain Description: GIIM Note: maturase Location: 469326-4695 5 4 bp Feature: gene Location: 469871-470041 bp Feature: gene Location: 470264-470647 bp Feature: domain Description: Phage_antitermQ Location: 470270-470621 bp Feature: domain Description: Phage_antitermQ Location: 470270-470621 bp Feature: gene Location: 479264-479686 bp Feature: domain Description: DUF1133 Location: 479267-479660 bp Feature: domain Description: DUF1133 Location: 479267-479660 bp Feature: gene Location: 479715-480119 bp Feature: domain Description: PHA02517 Location: 479718-480108 bp Feature: domain Description: PHA025 17 Location: 479718-480108 bp Feature: gene Location: 480284-481807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480557-481289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4805 5 7-481289 bp Feature: domain Description: GIIM Note: maturase Location: 481364-481562 bp Feature: domain Description: GIIM Note: maturase Location: 481364-4815 62 bp Feature: gene Location: 481761-482186 bp Feature: gene Location: 482399-482824 bp Feature: domain Description: PHA02517 Location: 482423-482759 bp Feature: domain Description: PHA025 17 Location: 482423-48275 9 bp Feature: gene Location: 874000-874128 bp Feature: gene Location: 874176-874457 bp Feature: domain Description: PHA02517 Location: 874182-874392 bp Feature: domain Description: PHA025 17 Location: 874182-874392 bp Feature: gene Location: 875049-876572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875322-876054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875 322-87605 4 bp Feature: domain Description: GIIM Note: maturase Location: 876129-876327 bp Feature: domain Description: GIIM Note: maturase Location: 876129-876327 bp Feature: gene Location: 876749-877135 bp Feature: domain Description: PHA02517 Location: 876752-877133 bp Feature: domain Description: PHA025 17 Location: 87675 2-877133 bp Feature: gene Location: 877175-877516 bp Feature: domain Description: Inovirus_Gp2 Location: 877244-877508 bp Feature: domain Description: Inovirus_Gp2 Location: 877244-8775 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_2_1 (pfam04971), RVT-GII, GIIM (pfam08388), Phage_antitermQ (pfam06530), DUF1133 (pfam06576), PHA02517 (putative transposase OrfB; Reviewed), Inovirus_Gp2 (pfam11726)

Seq: WACK01000007.1 Shigella flexneri strain AR-0421 contig7_AR-0421, whole genome shotgun sequence (547534 bp)
Overview 1 RT 1: 485627-490798 bp Neighborhood of RT #1 [485627, 490815] PRK15090 MFS_MMR_MDR_like RVT-GII GIIM PRK05457 Feature: gene Location: 485627-486418 bp Feature: domain Description: PRK15090 Location: 485639-486407 bp Feature: domain Description: PRK15090 Location: 4856 39-486 407 bp Feature: gene Location: 486484-487971 bp Feature: domain Description: MFS_MMR_MDR_like Location: 486658-487936 bp Feature: domain Description: MFS_MMR_MDR_like Location: 486 6 58-487936 bp Feature: gene Location: 488034-489455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488391-489006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488391-489006 bp Feature: domain Description: GIIM Note: maturase Location: 489060-489288 bp Feature: domain Description: GIIM Note: maturase Location: 48906 0-489288 bp Feature: gene Location: 489482-489778 bp Feature: gene Location: 489934-490815 bp Feature: domain Description: PRK05457 Location: 489937-490798 bp Feature: domain Description: PRK05457 Location: 489937-490798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15090 (DNA-binding transcriptional regulator KdgR; Provisional), MFS_MMR_MDR_like (cd17504), RVT-GII, GIIM (pfam08388), PRK05457 (protease HtpX)