myRT

myRT report for GCA_008973585.1_ASM897358v1

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Seq: WACM01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR-0409 plasmid pAR-0409-1 contig8_AR-0409, whole genome shotgun sequence (51584 bp)
Overview 1 RT 1: 14652-18135 bp Neighborhood of RT #1 [14652, 18135] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 14652-14804 bp Feature: gene Location: 14903-15775 bp Feature: domain Description: DUF1281 Location: 14972-15500 bp Feature: domain Description: DUF1 281 Location: 1 4972-1 5500 bp Feature: domain Description: DUF1281_C Location: 15506-15698 bp Feature: domain Description: DUF1 281 _C Location: 1 5506-1 5698 bp Feature: gene Location: 15852-17576 bp Feature: RT Description: RVT_N Location: 15909-16146 bp Feature: RT Description: RVT_N Location: 1 5909-1 61 46 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16197-16845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 97-1 6845 bp Feature: domain Description: YkfC Location: 16977-17133 bp Feature: domain Description: YkfC Location: 1 6977-1 71 33 bp Feature: domain Description: HNHc Note: nucleases Location: 17361-17520 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7361 -1 7520 bp Feature: gene Location: 17617-17757 bp Feature: gene Location: 17839-18135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: WACM01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AR-0409 contig1_AR-0409, whole genome shotgun sequence (1213887 bp)
Overview 1 RT 1: 726928-731104 bp Neighborhood of RT #1 [726928, 731104] PRK10473 RVT-Retrons Feature: gene Location: 726928-728115 bp Feature: domain Description: PRK10473 Location: 726931-728107 bp Feature: domain Description: PRK10473 Location: 72 6931-72 8107 bp Feature: gene Location: 728460-728669 bp Feature: gene Location: 728917-729852 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 729028-729613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 72 902 8-72 9613 bp Feature: gene Location: 729852-730814 bp Feature: gene Location: 730841-731104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons