myRT

myRT report for GCA_008974265.1_ASM897426v1

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Seq: BKZW01000001.1 Dictyobacter sp. W12 DNA, sequence1, whole genome shotgun sequence (4245503 bp)
Overview 1 RT 1: 2167830-2173946 bp 2 RT 2: 2459785-2463876 bp 3 RT 3: 3741586-3745585 bp Neighborhood of RT #1 [2167830, 2173946] DDE_5 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [2459785, 2463881] RVT-GII Intron_maturas2 HNHc BcsQ BcsQ Neighborhood of RT #3 [3741586, 3745585] DUF820 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2167830-2168099 bp Feature: gene Location: 2168521-2169834 bp Feature: domain Description: DDE_5 Location: 2168563-2169310 bp Feature: domain Description: DDE_5 Location: 21 68563-21 6931 0 bp Feature: gene Location: 2170209-2172062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2170476-2171283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 70476-21 71 283 bp Feature: domain Description: Intron_maturas2 Location: 2171382-2171676 bp Feature: domain Description: Intron_maturas2 Location: 21 71 382-21 71 676 bp Feature: domain Description: HNHc Note: nucleases Location: 2171829-2172000 bp Feature: domain Description: HNHc Note: nucleases Location: 21 71 829-21 72000 bp Feature: gene Location: 2172884-2173333 bp Feature: gene Location: 2173452-2173946 bp Feature: gene Location: 2459785-2460294 bp Feature: gene Location: 2460506-2460676 bp Feature: gene Location: 2461187-2463112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461454-2462246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2461 454-2462246 bp Feature: domain Description: Intron_maturas2 Location: 2462375-2462621 bp Feature: domain Description: Intron_maturas2 Location: 2462375-2462621 bp Feature: domain Description: HNHc Note: nucleases Location: 2462786-2462993 bp Feature: domain Description: HNHc Note: nucleases Location: 2462786-2462993 bp Feature: gene Location: 2463109-2463594 bp Feature: domain Description: BcsQ Location: 2463160-2463592 bp Feature: domain Description: BcsQ Location: 24631 60-2463592 bp Feature: gene Location: 2463600-2463881 bp Feature: domain Description: BcsQ Location: 2463603-2463876 bp Feature: domain Description: BcsQ Location: 2463603-2463876 bp Feature: gene Location: 3741586-3742197 bp Feature: domain Description: DUF820 Location: 3741661-3742087 bp Feature: domain Description: DUF820 Location: 3741 661 -3742087 bp Feature: gene Location: 3742580-3742909 bp Feature: gene Location: 3742925-3744616 bp Feature: domain Description: RVT_N Location: 3742979-3743225 bp Feature: domain Description: RVT_N Location: 3742979-3743225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3743273-3743912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3743273-374391 2 bp Feature: domain Description: GIIM Note: maturase Location: 3743984-3744218 bp Feature: domain Description: GIIM Note: maturase Location: 3743984-374421 8 bp Feature: domain Description: HNHc Note: nucleases Location: 3744416-3744581 bp Feature: domain Description: HNHc Note: nucleases Location: 374441 6-3744581 bp Feature: gene Location: 3744657-3745229 bp Feature: gene Location: 3745412-3745585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), BcsQ (COG1192), DUF820, RVT_N (pfam13655), GIIM (pfam08388)

Seq: BKZW01000002.1 Dictyobacter sp. W12 DNA, sequence2, whole genome shotgun sequence (1572654 bp)
Overview 1 RT 1: 1435973-1440022 bp Neighborhood of RT #1 [1435973, 1440022] Trans_IPPS RVT-GII KOG4768 Feature: gene Location: 1435973-1437001 bp Feature: domain Description: Trans_IPPS Location: 1436186-1436795 bp Feature: domain Description: Trans_IPPS Location: 1436186-1436795 bp Feature: gene Location: 1437048-1437203 bp Feature: gene Location: 1437720-1438634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1438080-1438515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1438080-1438515 bp Feature: gene Location: 1438826-1439662 bp Feature: domain Description: KOG4768 Location: 1438832-1439600 bp Feature: domain Description: KOG4768 Location: 1438832 -1439600 bp Feature: gene Location: 1439816-1440022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trans_IPPS (cd00867), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: BKZW01000003.1 Dictyobacter sp. W12 DNA, sequence3, whole genome shotgun sequence (719274 bp)
Overview 1 RT 1: 599252-605772 bp Neighborhood of RT #1 [599252, 605772] MFS_LmrB_MDR_like LRR_1 LRR LRR_1 LRR LRR_4 LRR_1 RVT-UNC Glyoxalase_6 Feature: gene Location: 599252-600208 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 599258-600131 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 599258-60013 1 bp Feature: gene Location: 600251-601477 bp Feature: domain Description: LRR_1 Location: 600395-600659 bp Feature: domain Description: LRR_1 Location: 6003 95-600659 bp Feature: domain Description: LRR Location: 600683-600746 bp Feature: domain Description: LRR Location: 600683 -600746 bp Feature: domain Description: LRR_1 Location: 600749-601010 bp Feature: domain Description: LRR_1 Location: 600749-601010 bp Feature: domain Description: LRR Location: 601034-601094 bp Feature: domain Description: LRR Location: 60103 4-601094 bp Feature: domain Description: LRR_4 Location: 601112-601220 bp Feature: domain Description: LRR_4 Location: 601112-601220 bp Feature: domain Description: LRR_1 Location: 601229-601433 bp Feature: domain Description: LRR_1 Location: 601229-60143 3 bp Feature: gene Location: 601722-604154 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 602943-603321 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 602943 -603 3 21 bp Feature: gene Location: 604370-604810 bp Feature: domain Description: Glyoxalase_6 Location: 604388-604805 bp Feature: domain Description: Glyoxalase_6 Location: 6043 88-604805 bp Feature: gene Location: 605263-605772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_LmrB_MDR_like (cd17503), LRR_1 (sd00031), LRR (smart00370), LRR_4 (pfam12799), RVT-UG17/RVT-CRISPR/RVT-UG19/RVT-DGRs(RVT-UNC), Glyoxalase_6 (pfam18029)

Seq: BKZW01000007.1 Dictyobacter sp. W12 DNA, sequence7, whole genome shotgun sequence (46764 bp)
Overview 1 RT 1: 12414-16911 bp Neighborhood of RT #1 [12414, 16925] RRXRR RVT_N RVT-GII GIIM HNHc McrA VOC_like Feature: gene Location: 12414-12563 bp Feature: gene Location: 12808-13392 bp Feature: domain Description: RRXRR Location: 12820-13348 bp Feature: domain Description: RRXRR Location: 12820-1334 8 bp Feature: gene Location: 14010-15701 bp Feature: domain Description: RVT_N Location: 14064-14310 bp Feature: domain Description: RVT_N Location: 14 064 -14 310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14358-14997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 358-14 997 bp Feature: domain Description: GIIM Note: maturase Location: 15069-15303 bp Feature: domain Description: GIIM Note: maturase Location: 15069-15303 bp Feature: domain Description: HNHc Note: nucleases Location: 15501-15666 bp Feature: domain Description: HNHc Note: nucleases Location: 15501-15666 bp Feature: gene Location: 15685-16500 bp Feature: domain Description: McrA Location: 15739-15970 bp Feature: domain Description: McrA Location: 15739-15970 bp Feature: gene Location: 16500-16925 bp Feature: domain Description: VOC_like Location: 16581-16911 bp Feature: domain Description: VOC_like Location: 16581-16911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRXRR (pfam14239), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), McrA (COG4058), VOC_like (cd16355)