myRT

myRT report for GCA_009019185.1_ASM901918v1

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Seq: WCWL01000014.1 Bacteroides uniformis strain BIOML-A85 scaffold14_size118982, whole genome shotgun sequence (118938 bp)
Overview 1 RT 1: 33214-37067 bp Neighborhood of RT #1 [33214, 37894] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 33214-33357 bp Feature: gene Location: 33378-34547 bp Feature: domain Description: TraG-D_C Location: 33903-34236 bp Feature: domain Description: TraG-D_C Location: 33903-34236 bp Feature: gene Location: 34534-36339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34798-35620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34798-35620 bp Feature: domain Description: Intron_maturas2 Location: 35698-36028 bp Feature: domain Description: Intron_maturas2 Location: 35698-36028 bp Feature: domain Description: HNHc Note: nucleases Location: 36172-36316 bp Feature: domain Description: HNHc Note: nucleases Location: 361 72-3631 6 bp Feature: gene Location: 36341-36856 bp Feature: gene Location: 36884-37894 bp Feature: domain Description: YWFCY Location: 36890-37067 bp Feature: domain Description: YWFCY Location: 36890-37067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCWL01000024.1 Bacteroides uniformis strain BIOML-A85 scaffold24_size81958, whole genome shotgun sequence (81958 bp)
Overview 1 RT 1: 9580-19649 bp Neighborhood of RT #1 [9580, 19651] HTH_ARAC RVT_N RVT-GII YkfC N6_Mtase COG4646 DUF1896 Feature: gene Location: 9580-10737 bp Feature: domain Description: HTH_ARAC Location: 10471-10717 bp Feature: domain Description: HTH_ARAC Location: 10471-10717 bp Feature: gene Location: 10880-12130 bp Feature: gene Location: 12084-13820 bp Feature: domain Description: RVT_N Location: 12207-12450 bp Feature: domain Description: RVT_N Location: 12 2 07-12 450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12495-13143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 495-13143 bp Feature: domain Description: YkfC Location: 13353-13443 bp Feature: domain Description: YkfC Location: 13353-13443 bp Feature: gene Location: 14425-19140 bp Feature: domain Description: N6_Mtase Location: 14737-15337 bp Feature: domain Description: N6_Mtase Location: 14737-15337 bp Feature: domain Description: COG4646 Location: 16747-18757 bp Feature: domain Description: COG4646 Location: 16747-18757 bp Feature: gene Location: 19130-19651 bp Feature: domain Description: DUF1896 Location: 19229-19649 bp Feature: domain Description: DUF1896 Location: 192 2 9-19649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: WCWL01000034.1 Bacteroides uniformis strain BIOML-A85 scaffold34_size51761, whole genome shotgun sequence (51761 bp)
Overview 1 RT 1: 7223-11370 bp Neighborhood of RT #1 [7223, 11370] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 7223-8434 bp Feature: domain Description: TipAS Location: 7247-7550 bp Feature: domain Description: TipAS Location: 7247-7550 bp Feature: domain Description: COG2369 Location: 7670-7856 bp Feature: domain Description: COG23 69 Location: 7670-7856 bp Feature: domain Description: LPD3 Location: 8075-8357 bp Feature: domain Description: LPD3 Location: 8075-83 57 bp Feature: gene Location: 8532-8765 bp Feature: gene Location: 9141-10442 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9354-9948 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93 54-9948 bp Feature: gene Location: 10439-10924 bp Feature: gene Location: 11128-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: WCWL01000043.1 Bacteroides uniformis strain BIOML-A85 scaffold43_size33002, whole genome shotgun sequence (33002 bp)
Overview 1 RT 1: 5213-9113 bp Neighborhood of RT #1 [5213, 10105] HTH_18 MutS_I RVT-DGRs Avd_like BF2867_like_N Feature: gene Location: 5213-6070 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: gene Location: 6094-6552 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: gene Location: 6549-7931 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6882-7572 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6882-7572 bp Feature: gene Location: 8108-8482 bp Feature: domain Description: Avd_like Location: 8135-8441 bp Feature: domain Description: Avd_like Location: 8135-84 4 1 bp Feature: gene Location: 8552-10105 bp Feature: domain Description: BF2867_like_N Location: 8588-9113 bp Feature: domain Description: BF2867_like_N Location: 8588-9113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), BF2867_like_N (cd13120)

Seq: WCWL01000044.1 Bacteroides uniformis strain BIOML-A85 scaffold44_size31765, whole genome shotgun sequence (31775 bp)
Overview 1 RT 1: 19723-28373 bp Neighborhood of RT #1 [19723, 28756] cNMP_binding RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 19723-20289 bp Feature: domain Description: cNMP_binding Location: 19810-20071 bp Feature: domain Description: cNMP_binding Location: 19810-20071 bp Feature: gene Location: 20429-21757 bp Feature: gene Location: 21711-23378 bp Feature: domain Description: RVT_N Location: 21765-22008 bp Feature: domain Description: RVT_N Location: 21765 -22008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22053-22701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2205 3-22701 bp Feature: domain Description: GIIM Note: maturase Location: 22755-22986 bp Feature: domain Description: GIIM Note: maturase Location: 2275 5 -22986 bp Feature: gene Location: 23360-23674 bp Feature: gene Location: 24035-28756 bp Feature: domain Description: N6_Mtase Location: 24347-24947 bp Feature: domain Description: N6_Mtase Location: 24347-24947 bp Feature: domain Description: COG4646 Location: 26345-28373 bp Feature: domain Description: COG4646 Location: 26345 -28373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: WCWL01000063.1 Bacteroides uniformis strain BIOML-A85 scaffold63_size14620, whole genome shotgun sequence (14443 bp)
Overview 1 RT 1: 1120-3940 bp Neighborhood of RT #1 [1120, 3940] RVT-DGRs Feature: gene Location: 1120-1353 bp Feature: gene Location: 1375-1632 bp Feature: gene Location: 1729-3030 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1942-2536 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1942-2536 bp Feature: gene Location: 3063-3512 bp Feature: gene Location: 3698-3940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWL01000064.1 Bacteroides uniformis strain BIOML-A85 scaffold64_size9930, whole genome shotgun sequence (9930 bp)
Overview 1 RT 1: 802-7018 bp Neighborhood of RT #1 [802, 7018] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 802-2052 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: gene Location: 2085-3011 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: domain Description: YWFCY Location: 2094-227 1 bp Feature: gene Location: 3648-5300 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: domain Description: RVT_N Location: 37 02-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: gene Location: 5305-6510 bp Feature: domain Description: TraG-D_C Location: 5887-6217 bp Feature: domain Description: TraG-D_C Location: 5887 -6217 bp Feature: gene Location: 6605-7018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCWL01000071.1 Bacteroides uniformis strain BIOML-A85 scaffold71_size6620, whole genome shotgun sequence (6620 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-418 9 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48 09-4920 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5354-5513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCWL01000008.1 Bacteroides uniformis strain BIOML-A85 scaffold8_size151267, whole genome shotgun sequence (151179 bp)
Overview 1 RT 1: 42901-47093 bp Neighborhood of RT #1 [42901, 47093] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 42901-43071 bp Feature: gene Location: 43076-43321 bp Feature: gene Location: 43363-45225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43687-44509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43687-44509 bp Feature: domain Description: Intron_maturas2 Location: 44617-44887 bp Feature: domain Description: Intron_maturas2 Location: 44617-44887 bp Feature: gene Location: 45203-46384 bp Feature: domain Description: TraG-D_C Location: 45731-46064 bp Feature: domain Description: TraG-D_C Location: 45731-46064 bp Feature: gene Location: 46680-47093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)