myRT

myRT report for GCA_009019195.1_ASM901919v1

Download annotations/find similar RTs

Seq: WCWK01000013.1 Bacteroides uniformis strain BIOML-A84 scaffold13_size105000, whole genome shotgun sequence (104945 bp)
Overview 1 RT 1: 35539-40549 bp Neighborhood of RT #1 [35539, 40815] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C DUF4326 Feature: gene Location: 35539-36549 bp Feature: domain Description: YWFCY Location: 35545-35722 bp Feature: domain Description: YWFCY Location: 35545-35722 bp Feature: gene Location: 36577-37092 bp Feature: gene Location: 37094-38899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37358-38180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37358-381 80 bp Feature: domain Description: Intron_maturas2 Location: 38258-38588 bp Feature: domain Description: Intron_maturas2 Location: 38258-38588 bp Feature: domain Description: HNHc Note: nucleases Location: 38732-38876 bp Feature: domain Description: HNHc Note: nucleases Location: 38732-38876 bp Feature: gene Location: 38886-40055 bp Feature: domain Description: TraG-D_C Location: 39411-39744 bp Feature: domain Description: TraG-D_C Location: 3941 1 -39744 bp Feature: gene Location: 40273-40815 bp Feature: domain Description: DUF4326 Location: 40294-40549 bp Feature: domain Description: DUF4326 Location: 40294-40549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: WCWK01000033.1 Bacteroides uniformis strain BIOML-A84 scaffold33_size87831, whole genome shotgun sequence (87756 bp)
Overview 1 RT 1: 43162-52909 bp Neighborhood of RT #1 [43162, 52909] RVT-DGRs RVT-DGRs Feature: gene Location: 43162-43350 bp Feature: gene Location: 43376-49867 bp Feature: gene Location: 50063-51751 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50276-50834 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 502 76-50834 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50840-51407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50840-51407 bp Feature: gene Location: 51852-52427 bp Feature: gene Location: 52460-52909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWK01000042.1 Bacteroides uniformis strain BIOML-A84 scaffold42_size39155, whole genome shotgun sequence (39097 bp)
Overview 1 RT 1: 19729-28379 bp Neighborhood of RT #1 [19729, 28762] cNMP_binding RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 19729-20295 bp Feature: domain Description: cNMP_binding Location: 19816-20077 bp Feature: domain Description: cNMP_binding Location: 19816-20077 bp Feature: gene Location: 20435-21763 bp Feature: gene Location: 21717-23384 bp Feature: domain Description: RVT_N Location: 21771-22014 bp Feature: domain Description: RVT_N Location: 21771-22014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22059-22707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22059-22707 bp Feature: domain Description: GIIM Note: maturase Location: 22761-22992 bp Feature: domain Description: GIIM Note: maturase Location: 22761-22992 bp Feature: gene Location: 23366-23680 bp Feature: gene Location: 24041-28762 bp Feature: domain Description: N6_Mtase Location: 24353-24953 bp Feature: domain Description: N6_Mtase Location: 243 53 -24953 bp Feature: domain Description: COG4646 Location: 26351-28379 bp Feature: domain Description: COG4646 Location: 263 51-283 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: WCWK01000049.1 Bacteroides uniformis strain BIOML-A84 scaffold49_size41917, whole genome shotgun sequence (41937 bp)
Overview 1 RT 1: 22007-32338 bp Neighborhood of RT #1 [22007, 32358] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 22007-22528 bp Feature: domain Description: DUF1896 Location: 22106-22526 bp Feature: domain Description: DUF1896 Location: 22106-22526 bp Feature: gene Location: 22518-27233 bp Feature: domain Description: N6_Mtase Location: 22830-23430 bp Feature: domain Description: N6_Mtase Location: 22830-234 30 bp Feature: domain Description: COG4646 Location: 24840-26850 bp Feature: domain Description: COG4 64 6 Location: 24 84 0-26850 bp Feature: gene Location: 28118-29854 bp Feature: domain Description: RVT_N Location: 28241-28484 bp Feature: domain Description: RVT_N Location: 2824 1-284 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28529-29177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28529-29177 bp Feature: domain Description: YkfC Location: 29387-29477 bp Feature: domain Description: YkfC Location: 29387-294 77 bp Feature: gene Location: 29808-31058 bp Feature: gene Location: 31228-32358 bp Feature: domain Description: HTH_ARAC Location: 32092-32338 bp Feature: domain Description: HTH_ARAC Location: 32092-32338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCWK01000065.1 Bacteroides uniformis strain BIOML-A84 scaffold65_size13268, whole genome shotgun sequence (13268 bp)
Overview 1 RT 1: 6251-10087 bp Neighborhood of RT #1 [6251, 10087] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 6251-6664 bp Feature: gene Location: 6759-7964 bp Feature: domain Description: TraG-D_C Location: 7341-7671 bp Feature: domain Description: TraG-D_C Location: 7341-7671 bp Feature: gene Location: 7969-9621 bp Feature: domain Description: RVT_N Location: 8023-8266 bp Feature: domain Description: RVT_N Location: 8023-8266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8311-8959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8311-895 9 bp Feature: domain Description: GIIM Note: maturase Location: 9013-9244 bp Feature: domain Description: GIIM Note: maturase Location: 9013-9244 bp Feature: gene Location: 9728-9892 bp Feature: gene Location: 9938-10087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWK01000068.1 Bacteroides uniformis strain BIOML-A84 scaffold68_size12688, whole genome shotgun sequence (12688 bp)
Overview 1 RT 1: 1533-4079 bp Neighborhood of RT #1 [1533, 4117] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 1533-2015 bp Feature: domain Description: GDP_FS_SDR_e Location: 1587-1989 bp Feature: domain Description: GDP_FS_SDR_e Location: 1587-1989 bp Feature: gene Location: 2008-2781 bp Feature: domain Description: GDP_FS_SDR_e Location: 2011-2755 bp Feature: domain Description: GDP_FS_SDR_e Location: 2011-2755 bp Feature: gene Location: 3372-3506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3375-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3375-3486 bp Feature: gene Location: 3528-3851 bp Feature: gene Location: 3896-4117 bp Feature: domain Description: Gmd Location: 3920-4079 bp Feature: domain Description: Gmd Location: 3920-4079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)