myRT

myRT report for GCA_009019235.1_ASM901923v1

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Seq: WCWI01000032.1 Bacteroides uniformis strain BIOML-A82 scaffold32_size62840, whole genome shotgun sequence (62840 bp)
Overview 1 RT 1: 43162-52274 bp Neighborhood of RT #1 [43162, 52274] RVT-DGRs Feature: gene Location: 43162-43350 bp Feature: gene Location: 43376-49867 bp Feature: gene Location: 50063-51364 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50276-50870 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50276-50870 bp Feature: gene Location: 51397-51846 bp Feature: gene Location: 52032-52274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWI01000040.1 Bacteroides uniformis strain BIOML-A82 scaffold40_size39920, whole genome shotgun sequence (39920 bp)
Overview 1 RT 1: 9468-19537 bp Neighborhood of RT #1 [9468, 19539] HTH_ARAC RVT_N RVT-GII YkfC N6_Mtase COG4646 DUF1896 Feature: gene Location: 9468-10625 bp Feature: domain Description: HTH_ARAC Location: 10359-10605 bp Feature: domain Description: HTH_ARAC Location: 10359-10605 bp Feature: gene Location: 10768-12018 bp Feature: gene Location: 11972-13708 bp Feature: domain Description: RVT_N Location: 12095-12338 bp Feature: domain Description: RVT_N Location: 12 095-12 338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12383-13031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 383-13031 bp Feature: domain Description: YkfC Location: 13241-13331 bp Feature: domain Description: YkfC Location: 132 41-13331 bp Feature: gene Location: 14313-19028 bp Feature: domain Description: N6_Mtase Location: 14625-15225 bp Feature: domain Description: N6_Mtase Location: 1462 5-152 2 5 bp Feature: domain Description: COG4646 Location: 16635-18645 bp Feature: domain Description: COG4646 Location: 16635-18645 bp Feature: gene Location: 19018-19539 bp Feature: domain Description: DUF1896 Location: 19117-19537 bp Feature: domain Description: DUF1896 Location: 19117-19537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: WCWI01000041.1 Bacteroides uniformis strain BIOML-A82 scaffold41_size39760, whole genome shotgun sequence (39760 bp)
Overview 1 RT 1: 1-3318 bp Neighborhood of RT #1 [1, 4145] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 1-798 bp Feature: domain Description: TraG-D_C Location: 526-778 bp Feature: domain Description: TraG-D_C Location: 526-778 bp Feature: gene Location: 785-2590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049-1871 bp Feature: domain Description: Intron_maturas2 Location: 1949-2279 bp Feature: domain Description: Intron_maturas2 Location: 1949-2279 bp Feature: domain Description: HNHc Note: nucleases Location: 2423-2567 bp Feature: domain Description: HNHc Note: nucleases Location: 2423 -2567 bp Feature: gene Location: 2592-3107 bp Feature: gene Location: 3135-4145 bp Feature: domain Description: YWFCY Location: 3141-3318 bp Feature: domain Description: YWFCY Location: 3 141-3 3 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCWI01000043.1 Bacteroides uniformis strain BIOML-A82 scaffold43_size38683, whole genome shotgun sequence (38683 bp)
Overview 1 RT 1: 19315-27965 bp Neighborhood of RT #1 [19315, 28348] cNMP_binding RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 19315-19881 bp Feature: domain Description: cNMP_binding Location: 19402-19663 bp Feature: domain Description: cNMP_binding Location: 194 02-19663 bp Feature: gene Location: 20021-21349 bp Feature: gene Location: 21303-22970 bp Feature: domain Description: RVT_N Location: 21357-21600 bp Feature: domain Description: RVT_N Location: 21357-21600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21645-22293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2164 5-22293 bp Feature: domain Description: GIIM Note: maturase Location: 22347-22578 bp Feature: domain Description: GIIM Note: maturase Location: 2234 7-22578 bp Feature: gene Location: 22952-23266 bp Feature: gene Location: 23627-28348 bp Feature: domain Description: N6_Mtase Location: 23939-24539 bp Feature: domain Description: N6_Mtase Location: 23939-24 539 bp Feature: domain Description: COG4646 Location: 25937-27965 bp Feature: domain Description: COG4 64 6 Location: 25937-27965 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: WCWI01000088.1 Bacteroides uniformis strain BIOML-A82 scaffold88_size12895, whole genome shotgun sequence (12688 bp)
Overview 1 RT 1: 1533-4079 bp Neighborhood of RT #1 [1533, 4117] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 1533-2015 bp Feature: domain Description: GDP_FS_SDR_e Location: 1587-1989 bp Feature: domain Description: GDP_FS_SDR_e Location: 15 87-1989 bp Feature: gene Location: 2008-2781 bp Feature: domain Description: GDP_FS_SDR_e Location: 2011-2755 bp Feature: domain Description: GDP_FS_SDR_e Location: 2011-275 5 bp Feature: gene Location: 3372-3506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3375-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3375 -3486 bp Feature: gene Location: 3528-3851 bp Feature: gene Location: 3896-4117 bp Feature: domain Description: Gmd Location: 3920-4079 bp Feature: domain Description: Gmd Location: 3920-4079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCWI01000092.1 Bacteroides uniformis strain BIOML-A82 scaffold92_size6023, whole genome shotgun sequence (6023 bp)
Overview 1 RT 1: 3-2842 bp Neighborhood of RT #1 [3, 2842] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 3-719 bp Feature: domain Description: TraG-D_C Location: 585-717 bp Feature: domain Description: TraG-D_C Location: 585-717 bp Feature: gene Location: 724-2376 bp Feature: domain Description: RVT_N Location: 778-1021 bp Feature: domain Description: RVT_N Location: 778-1021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106 6 -1714 bp Feature: domain Description: GIIM Note: maturase Location: 1768-1999 bp Feature: domain Description: GIIM Note: maturase Location: 176 8-1999 bp Feature: gene Location: 2483-2647 bp Feature: gene Location: 2693-2842 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)