myRT

myRT report for GCA_009019245.1_ASM901924v1

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Seq: WCWJ01000020.1 Bacteroides uniformis strain BIOML-A83 scaffold20_size70132, whole genome shotgun sequence (70393 bp)
Overview 1 RT 1: 66825-70342 bp Neighborhood of RT #1 [66825, 70371] RVT-DGRs RVT-DGRs RVT-DGRs RVT-DGRs Feature: gene Location: 66825-67067 bp Feature: gene Location: 67253-67702 bp Feature: gene Location: 67735-68565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67777-68071 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 67777-68071 bp Feature: gene Location: 68507-69853 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 68510-68987 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6851 0-68987 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 69011-69605 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6901 1 -69605 bp Feature: gene Location: 69850-70371 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70063-70342 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 70063-70342 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWJ01000035.1 Bacteroides uniformis strain BIOML-A83 scaffold35_size52450, whole genome shotgun sequence (52450 bp)
Overview 1 RT 1: 42669-47224 bp Neighborhood of RT #1 [42669, 47238] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 42669-43682 bp Feature: domain Description: AbiEii Location: 42795-43629 bp Feature: domain Description: AbiEii Location: 42 795-4362 9 bp Feature: gene Location: 43679-44275 bp Feature: domain Description: AbiEi_3_N Location: 43754-43997 bp Feature: domain Description: AbiEi_3_N Location: 43754-43997 bp Feature: gene Location: 44628-45902 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44853-45543 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44853-45543 bp Feature: gene Location: 45899-46357 bp Feature: domain Description: MutS_I Location: 45944-46139 bp Feature: domain Description: MutS_I Location: 45944-46139 bp Feature: gene Location: 46381-47238 bp Feature: domain Description: HTH_18 Location: 46990-47224 bp Feature: domain Description: HTH_18 Location: 46990-472 2 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCWJ01000003.1 Bacteroides uniformis strain BIOML-A83 scaffold3_size198730, whole genome shotgun sequence (198730 bp)
Overview 1 RT 1: 48847-55179 bp Neighborhood of RT #1 [48847, 55179] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 48847-49914 bp Feature: domain Description: AAA_25 Location: 48982-49444 bp Feature: domain Description: AAA_25 Location: 48982-49444 bp Feature: gene Location: 50126-50308 bp Feature: gene Location: 50856-52664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51120-51942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51120-51942 bp Feature: domain Description: Intron_maturas2 Location: 52011-52320 bp Feature: domain Description: Intron_maturas2 Location: 52011-523 20 bp Feature: gene Location: 52636-53565 bp Feature: domain Description: Toprim_2 Location: 53188-53476 bp Feature: domain Description: Toprim_2 Location: 53 188-53 476 bp Feature: gene Location: 53776-55179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCWJ01000055.1 Bacteroides uniformis strain BIOML-A83 scaffold55_size23166, whole genome shotgun sequence (23166 bp)
Overview 1 RT 1: 17716-23010 bp Neighborhood of RT #1 [17716, 23010] YWFCY T4SS-DNA_transf RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 17716-18729 bp Feature: domain Description: YWFCY Location: 17722-17899 bp Feature: domain Description: YWFCY Location: 17722-17899 bp Feature: domain Description: T4SS-DNA_transf Location: 18190-18697 bp Feature: domain Description: T4 SS-DNA_transf Location: 18190-18697 bp Feature: gene Location: 18978-19238 bp Feature: gene Location: 19280-21142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19604-20426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19604 -204 26 bp Feature: domain Description: Intron_maturas2 Location: 20534-20804 bp Feature: domain Description: Intron_maturas2 Location: 20534 -20804 bp Feature: gene Location: 21120-22301 bp Feature: domain Description: TraG-D_C Location: 21648-21981 bp Feature: domain Description: TraG-D_C Location: 2164 8-21981 bp Feature: gene Location: 22597-23010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCWJ01000058.1 Bacteroides uniformis strain BIOML-A83 scaffold58_size23400, whole genome shotgun sequence (23314 bp)
Overview 1 RT 1: 19315-23266 bp Neighborhood of RT #1 [19315, 23266] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 19315-19881 bp Feature: domain Description: cNMP_binding Location: 19402-19663 bp Feature: domain Description: cNMP_binding Location: 19402-19663 bp Feature: gene Location: 20021-21349 bp Feature: gene Location: 21303-22970 bp Feature: domain Description: RVT_N Location: 21357-21600 bp Feature: domain Description: RVT_N Location: 2135 7-21600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21645-22293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21645 -22293 bp Feature: domain Description: GIIM Note: maturase Location: 22347-22578 bp Feature: domain Description: GIIM Note: maturase Location: 22347-225 78 bp Feature: gene Location: 22985-23266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWJ01000070.1 Bacteroides uniformis strain BIOML-A83 scaffold70_size14122, whole genome shotgun sequence (14122 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5354-5513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCWJ01000071.1 Bacteroides uniformis strain BIOML-A83 scaffold71_size14534, whole genome shotgun sequence (14402 bp)
Overview 1 RT 1: 9582-13445 bp Neighborhood of RT #1 [9582, 13822] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 9582-10712 bp Feature: domain Description: HTH_ARAC Location: 10446-10692 bp Feature: domain Description: HTH_ARAC Location: 10446-10692 bp Feature: gene Location: 10882-12132 bp Feature: gene Location: 12086-13822 bp Feature: domain Description: RVT_N Location: 12209-12452 bp Feature: domain Description: RVT_N Location: 12209-12452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12497-13145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12497 -13145 bp Feature: domain Description: YkfC Location: 13355-13445 bp Feature: domain Description: YkfC Location: 13355-13445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCWJ01000072.1 Bacteroides uniformis strain BIOML-A83 scaffold72_size13265, whole genome shotgun sequence (13265 bp)
Overview 1 RT 1: 802-7018 bp Neighborhood of RT #1 [802, 7018] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 802-2052 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: gene Location: 2085-3011 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: gene Location: 3648-5300 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: gene Location: 5305-6510 bp Feature: domain Description: TraG-D_C Location: 5887-6217 bp Feature: domain Description: TraG-D_C Location: 58 8 7-6217 bp Feature: gene Location: 6605-7018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)