myRT

myRT report for GCA_009019275.1_ASM901927v1

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Seq: WCWG01000043.1 Bacteroides uniformis strain BIOML-A80 scaffold43_size36887, whole genome shotgun sequence (36887 bp)
Overview 1 RT 1: 280-2491 bp Neighborhood of RT #1 [280, 2491] RVT-DGRs Feature: gene Location: 280-1581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-1087 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-1 087 bp Feature: gene Location: 1614-2063 bp Feature: gene Location: 2249-2491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWG01000051.1 Bacteroides uniformis strain BIOML-A80 scaffold51_size21236, whole genome shotgun sequence (21236 bp)
Overview 1 RT 1: 11154-16032 bp Neighborhood of RT #1 [11154, 16046] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 11154-12707 bp Feature: domain Description: BF2867_like_N Location: 11190-11715 bp Feature: domain Description: BF2 867_like_N Location: 11190-11715 bp Feature: gene Location: 12777-13151 bp Feature: domain Description: Avd_like Location: 12804-13110 bp Feature: domain Description: Avd_like Location: 12 804-13110 bp Feature: gene Location: 13328-14710 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13661-14351 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13661-14351 bp Feature: gene Location: 14707-15165 bp Feature: domain Description: MutS_I Location: 14752-14947 bp Feature: domain Description: MutS_I Location: 14752 -14947 bp Feature: gene Location: 15189-16046 bp Feature: domain Description: HTH_18 Location: 15798-16032 bp Feature: domain Description: HTH_18 Location: 15798-16032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCWG01000055.1 Bacteroides uniformis strain BIOML-A80 scaffold55_size18610, whole genome shotgun sequence (18610 bp)
Overview 1 RT 1: 14633-18584 bp Neighborhood of RT #1 [14633, 18584] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 14633-15199 bp Feature: domain Description: cNMP_binding Location: 14720-14981 bp Feature: domain Description: cNMP_binding Location: 14720-14981 bp Feature: gene Location: 15339-16667 bp Feature: gene Location: 16621-18288 bp Feature: domain Description: RVT_N Location: 16675-16918 bp Feature: domain Description: RVT_N Location: 16675-16918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16963-17611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16963 -17611 bp Feature: domain Description: GIIM Note: maturase Location: 17665-17896 bp Feature: domain Description: GIIM Note: maturase Location: 17665-17896 bp Feature: gene Location: 18303-18584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWG01000065.1 Bacteroides uniformis strain BIOML-A80 scaffold65_size14400, whole genome shotgun sequence (14400 bp)
Overview 1 RT 1: 581-4801 bp Neighborhood of RT #1 [581, 4821] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 581-2317 bp Feature: domain Description: RVT_N Location: 704-947 bp Feature: domain Description: RVT_N Location: 704 -94 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-164 0 bp Feature: domain Description: YkfC Location: 1850-1940 bp Feature: domain Description: YkfC Location: 1850-194 0 bp Feature: gene Location: 2271-3521 bp Feature: gene Location: 3691-4821 bp Feature: domain Description: HTH_ARAC Location: 4555-4801 bp Feature: domain Description: HTH_ARAC Location: 4 555-4 801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCWG01000071.1 Bacteroides uniformis strain BIOML-A80 scaffold71_size11130, whole genome shotgun sequence (11130 bp)
Overview 1 RT 1: 3-4888 bp Neighborhood of RT #1 [3, 4888] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-881 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: gene Location: 1518-3170 bp Feature: domain Description: RVT_N Location: 1572-1815 bp Feature: domain Description: RVT_N Location: 15 72-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-25 08 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2793 bp Feature: domain Description: GIIM Note: maturase Location: 25 62-2793 bp Feature: gene Location: 3175-4380 bp Feature: domain Description: TraG-D_C Location: 3757-4087 bp Feature: domain Description: TraG-D_C Location: 375 7-4087 bp Feature: gene Location: 4475-4888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCWG01000079.1 Bacteroides uniformis strain BIOML-A80 scaffold79_size7561, whole genome shotgun sequence (7561 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-416 7 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)