myRT

myRT report for GCA_009019285.1_ASM901928v1

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Seq: WCWH01000015.1 Bacteroides uniformis strain BIOML-A81 scaffold15_size95903, whole genome shotgun sequence (95903 bp)
Overview 1 RT 1: 88374-92597 bp Neighborhood of RT #1 [88374, 92597] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 88374-88787 bp Feature: gene Location: 89083-90264 bp Feature: domain Description: TraG-D_C Location: 89611-89944 bp Feature: domain Description: TraG-D_C Location: 8961 1 -89944 bp Feature: gene Location: 90242-92104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90566-91388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90566-91 388 bp Feature: domain Description: Intron_maturas2 Location: 91496-91766 bp Feature: domain Description: Intron_maturas2 Location: 91 496-91 766 bp Feature: gene Location: 92146-92391 bp Feature: gene Location: 92385-92597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWH01000001.1 Bacteroides uniformis strain BIOML-A81 scaffold1_size314717, whole genome shotgun sequence (314717 bp)
Overview 1 RT 1: 284908-290012 bp Neighborhood of RT #1 [284908, 290012] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 284908-286311 bp Feature: gene Location: 286522-287451 bp Feature: domain Description: Toprim_2 Location: 287074-287362 bp Feature: domain Description: Toprim_2 Location: 2 87074-2 87362 bp Feature: gene Location: 287423-289231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287687-288509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 87687-2 88509 bp Feature: domain Description: Intron_maturas2 Location: 288578-288887 bp Feature: domain Description: Intron_maturas2 Location: 2 88578-2 88887 bp Feature: gene Location: 289520-289663 bp Feature: gene Location: 289779-290012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWH01000002.1 Bacteroides uniformis strain BIOML-A81 scaffold2_size221214, whole genome shotgun sequence (221214 bp)
Overview 1 RT 1: 39881-44891 bp Neighborhood of RT #1 [39881, 45157] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C DUF4326 Feature: gene Location: 39881-40891 bp Feature: domain Description: YWFCY Location: 39887-40064 bp Feature: domain Description: YWFCY Location: 3 9887-40064 bp Feature: gene Location: 40919-41434 bp Feature: gene Location: 41436-43241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41700-42522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41700-42522 bp Feature: domain Description: Intron_maturas2 Location: 42600-42930 bp Feature: domain Description: Intron_maturas2 Location: 42600-4293 0 bp Feature: domain Description: HNHc Note: nucleases Location: 43074-43218 bp Feature: domain Description: HNHc Note: nucleases Location: 43 074-43 218 bp Feature: gene Location: 43228-44397 bp Feature: domain Description: TraG-D_C Location: 43753-44086 bp Feature: domain Description: TraG-D_C Location: 43 753 -44086 bp Feature: gene Location: 44615-45157 bp Feature: domain Description: DUF4326 Location: 44636-44891 bp Feature: domain Description: DUF43 26 Location: 4463 6-44891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: WCWH01000045.1 Bacteroides uniformis strain BIOML-A81 scaffold45_size32982, whole genome shotgun sequence (32982 bp)
Overview 1 RT 1: 22874-27751 bp Neighborhood of RT #1 [22874, 27765] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 22874-24427 bp Feature: domain Description: BF2867_like_N Location: 22910-23435 bp Feature: domain Description: BF2867_like_N Location: 22910-234 35 bp Feature: gene Location: 24497-24871 bp Feature: domain Description: Avd_like Location: 24524-24830 bp Feature: domain Description: Avd_like Location: 24 524 -24 830 bp Feature: gene Location: 25155-26429 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25380-26070 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25380-26070 bp Feature: gene Location: 26426-26884 bp Feature: domain Description: MutS_I Location: 26471-26666 bp Feature: domain Description: MutS_I Location: 264 71-26666 bp Feature: gene Location: 26908-27765 bp Feature: domain Description: HTH_18 Location: 27517-27751 bp Feature: domain Description: HTH_18 Location: 27517-27751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCWH01000060.1 Bacteroides uniformis strain BIOML-A81 scaffold60_size19016, whole genome shotgun sequence (19016 bp)
Overview 1 RT 1: 15039-18990 bp Neighborhood of RT #1 [15039, 18990] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 15039-15605 bp Feature: domain Description: cNMP_binding Location: 15126-15387 bp Feature: domain Description: cNMP_binding Location: 15 126-15 387 bp Feature: gene Location: 15745-17073 bp Feature: gene Location: 17027-18694 bp Feature: domain Description: RVT_N Location: 17081-17324 bp Feature: domain Description: RVT_N Location: 17081-17324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17369-18017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17369-18017 bp Feature: domain Description: GIIM Note: maturase Location: 18071-18302 bp Feature: domain Description: GIIM Note: maturase Location: 18071-18302 bp Feature: gene Location: 18709-18990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWH01000069.1 Bacteroides uniformis strain BIOML-A81 scaffold69_size14084, whole genome shotgun sequence (14084 bp)
Overview 1 RT 1: 272-4492 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 395-6 38 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 83-1331 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 1541-16 31 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3382-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 4246 -4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCWH01000082.1 Bacteroides uniformis strain BIOML-A81 scaffold82_size11130, whole genome shotgun sequence (11130 bp)
Overview 1 RT 1: 3-4888 bp Neighborhood of RT #1 [3, 4888] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-881 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: domain Description: YWFCY Location: 6-141 bp Feature: gene Location: 1518-3170 bp Feature: domain Description: RVT_N Location: 1572-1815 bp Feature: domain Description: RVT_N Location: 157 2-1815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1860-2508 bp Feature: domain Description: GIIM Note: maturase Location: 2562-2793 bp Feature: domain Description: GIIM Note: maturase Location: 2562-27 93 bp Feature: gene Location: 3175-4380 bp Feature: domain Description: TraG-D_C Location: 3757-4087 bp Feature: domain Description: TraG-D_C Location: 37 57 -4087 bp Feature: gene Location: 4475-4888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCWH01000086.1 Bacteroides uniformis strain BIOML-A81 scaffold86_size14358, whole genome shotgun sequence (14358 bp)
Overview 1 RT 1: 1-2820 bp Neighborhood of RT #1 [1, 2897] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 1-252 bp Feature: gene Location: 353-979 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 566-959 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 566-959 bp Feature: gene Location: 1355-1588 bp Feature: gene Location: 1686-2897 bp Feature: domain Description: TipAS Location: 1710-2013 bp Feature: domain Description: TipAS Location: 1710-2013 bp Feature: domain Description: COG2369 Location: 2133-2319 bp Feature: domain Description: COG2369 Location: 2133-2319 bp Feature: domain Description: LPD3 Location: 2538-2820 bp Feature: domain Description: LPD3 Location: 2538 -28 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: WCWH01000095.1 Bacteroides uniformis strain BIOML-A81 scaffold95_size6576, whole genome shotgun sequence (6576 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 29 9 9 -3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-489 8 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-549 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)