myRT

myRT report for GCA_009019315.1_ASM901931v1

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Seq: WCWF01000101.1 Bacteroides uniformis strain BIOML-A79 scaffold101_size7664, whole genome shotgun sequence (7664 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 1 372-1 705 bp Feature: gene Location: 2003-3805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-3089 bp Feature: domain Description: Intron_maturas2 Location: 3197-3467 bp Feature: domain Description: Intron_maturas2 Location: 31 97-3467 bp Feature: gene Location: 3907-4167 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWF01000108.1 Bacteroides uniformis strain BIOML-A79 scaffold108_size6576, whole genome shotgun sequence (6576 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2 999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 342 3-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332 -5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCWF01000119.1 Bacteroides uniformis strain BIOML-A79 scaffold119_size5232, whole genome shotgun sequence (5232 bp)
Overview 1 RT 1: 3-5229 bp Neighborhood of RT #1 [3, 5231] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-1283 bp Feature: domain Description: Relaxase Location: 144-597 bp Feature: domain Description: Relaxase Location: 144-597 bp Feature: gene Location: 1316-2242 bp Feature: domain Description: YWFCY Location: 1325-1502 bp Feature: domain Description: YWFCY Location: 13 25-1502 bp Feature: gene Location: 2879-4531 bp Feature: domain Description: RVT_N Location: 2933-3176 bp Feature: domain Description: RVT_N Location: 293 3 -3 176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221-3869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 221-3 869 bp Feature: domain Description: GIIM Note: maturase Location: 3923-4154 bp Feature: domain Description: GIIM Note: maturase Location: 3 923 -4154 bp Feature: gene Location: 4536-5231 bp Feature: domain Description: TraG-D_C Location: 5118-5229 bp Feature: domain Description: TraG-D_C Location: 5118-5229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCWF01000148.1 Bacteroides uniformis strain BIOML-A79 scaffold148_size2229, whole genome shotgun sequence (2229 bp)
Overview 1 RT 1: 2-1581 bp Neighborhood of RT #1 [2, 1958] RVT_N RVT-GII YkfC Feature: gene Location: 2-268 bp Feature: gene Location: 222-1958 bp Feature: domain Description: RVT_N Location: 345-588 bp Feature: domain Description: RVT_N Location: 34 5-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 633-1281 bp Feature: domain Description: YkfC Location: 1491-1581 bp Feature: domain Description: YkfC Location: 14 91-1581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCWF01000164.1 Bacteroides uniformis strain BIOML-A79 scaffold164_size1495, whole genome shotgun sequence (1495 bp)
Overview 1 RT 1: 280-1087 bp Neighborhood of RT #1 [280, 1494] RVT-DGRs Feature: gene Location: 280-1494 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-1087 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-1087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWF01000030.1 Bacteroides uniformis strain BIOML-A79 scaffold30_size58190, whole genome shotgun sequence (58190 bp)
Overview 1 RT 1: 33192-37045 bp Neighborhood of RT #1 [33192, 37872] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 33192-33335 bp Feature: gene Location: 33356-34525 bp Feature: domain Description: TraG-D_C Location: 33881-34214 bp Feature: domain Description: TraG-D_C Location: 33881-34214 bp Feature: gene Location: 34512-36317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34776-35598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34776 -35598 bp Feature: domain Description: Intron_maturas2 Location: 35676-36006 bp Feature: domain Description: Intron_maturas2 Location: 356 76 -36 006 bp Feature: domain Description: HNHc Note: nucleases Location: 36150-36294 bp Feature: domain Description: HNHc Note: nucleases Location: 36 150-36 294 bp Feature: gene Location: 36319-36834 bp Feature: gene Location: 36862-37872 bp Feature: domain Description: YWFCY Location: 36868-37045 bp Feature: domain Description: YWFCY Location: 36 86 8-37045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCWF01000050.1 Bacteroides uniformis strain BIOML-A79 scaffold50_size31780, whole genome shotgun sequence (31780 bp)
Overview 1 RT 1: 5191-9091 bp Neighborhood of RT #1 [5191, 10083] HTH_18 MutS_I RVT-DGRs Avd_like BF2867_like_N Feature: gene Location: 5191-6048 bp Feature: domain Description: HTH_18 Location: 5800-6034 bp Feature: domain Description: HTH_18 Location: 5800-6034 bp Feature: gene Location: 6072-6530 bp Feature: domain Description: MutS_I Location: 6117-6312 bp Feature: domain Description: MutS_I Location: 6117 -6312 bp Feature: gene Location: 6527-7909 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6860-7550 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6860-7 550 bp Feature: gene Location: 8086-8460 bp Feature: domain Description: Avd_like Location: 8113-8419 bp Feature: domain Description: Avd_like Location: 8113-8419 bp Feature: gene Location: 8530-10083 bp Feature: domain Description: BF2867_like_N Location: 8566-9091 bp Feature: domain Description: BF2867 _like_N Location: 8566-9091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), BF2867_like_N (cd13120)

Seq: WCWF01000070.1 Bacteroides uniformis strain BIOML-A79 scaffold70_size18436, whole genome shotgun sequence (18436 bp)
Overview 1 RT 1: 14459-18410 bp Neighborhood of RT #1 [14459, 18410] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 14459-15025 bp Feature: domain Description: cNMP_binding Location: 14546-14807 bp Feature: domain Description: cNMP_binding Location: 14546-148 07 bp Feature: gene Location: 15165-16493 bp Feature: gene Location: 16447-18114 bp Feature: domain Description: RVT_N Location: 16501-16744 bp Feature: domain Description: RVT_N Location: 16501-16744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16789-17437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678 9-17437 bp Feature: domain Description: GIIM Note: maturase Location: 17491-17722 bp Feature: domain Description: GIIM Note: maturase Location: 17491-17722 bp Feature: gene Location: 18129-18410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)