myRT

myRT report for GCA_009019335.1_ASM901933v1

Download annotations/find similar RTs

Seq: WCWC01000144.1 Bacteroides uniformis strain BIOML-A75 scaffold144_size7126, whole genome shotgun sequence (7126 bp)
Overview 1 RT 1: 2976-5489 bp Neighborhood of RT #1 [2976, 5527] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2976-3425 bp Feature: domain Description: GDP_FS_SDR_e Location: 2997-3399 bp Feature: domain Description: GDP_FS_SDR_e Location: 2997-3399 bp Feature: gene Location: 3418-4191 bp Feature: domain Description: GDP_FS_SDR_e Location: 3421-4165 bp Feature: domain Description: GDP_FS_SDR_e Location: 3421 -41 65 bp Feature: gene Location: 4782-4916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785-4896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4785-4896 bp Feature: gene Location: 4938-5261 bp Feature: gene Location: 5306-5527 bp Feature: domain Description: Gmd Location: 5330-5489 bp Feature: domain Description: Gmd Location: 5330-5489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCWC01000182.1 Bacteroides uniformis strain BIOML-A75 scaffold182_size3761, whole genome shotgun sequence (3761 bp)
Overview 1 RT 1: 2-3759 bp Neighborhood of RT #1 [2, 3759] RVT_N RVT-GII YkfC Feature: gene Location: 2-1030 bp Feature: gene Location: 984-2720 bp Feature: domain Description: RVT_N Location: 1107-1350 bp Feature: domain Description: RVT_N Location: 1107-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395-2043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1395-2 043 bp Feature: domain Description: YkfC Location: 2253-2343 bp Feature: domain Description: YkfC Location: 2 2 53-2 343 bp Feature: gene Location: 3325-3759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCWC01000214.1 Bacteroides uniformis strain BIOML-A75 scaffold214_size2394, whole genome shotgun sequence (2394 bp)
Overview 1 RT 1: 2-2368 bp Neighborhood of RT #1 [2, 2368] RVT_N RVT-GII GIIM Feature: gene Location: 2-451 bp Feature: gene Location: 405-2072 bp Feature: domain Description: RVT_N Location: 459-702 bp Feature: domain Description: RVT_N Location: 459-702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-13 95 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1680 bp Feature: domain Description: GIIM Note: maturase Location: 1449-1680 bp Feature: gene Location: 2054-2368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWC01000023.1 Bacteroides uniformis strain BIOML-A75 scaffold23_size60082, whole genome shotgun sequence (60082 bp)
Overview 1 RT 1: 2240-7344 bp Neighborhood of RT #1 [2240, 7344] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 2240-3643 bp Feature: gene Location: 3854-4783 bp Feature: domain Description: Toprim_2 Location: 4406-4694 bp Feature: domain Description: Toprim_2 Location: 4 4 06-4 694 bp Feature: gene Location: 4755-6563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5019-5841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5019-584 1 bp Feature: domain Description: Intron_maturas2 Location: 5910-6219 bp Feature: domain Description: Intron_maturas2 Location: 5910-6219 bp Feature: gene Location: 6852-6995 bp Feature: gene Location: 7111-7344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWC01000030.1 Bacteroides uniformis strain BIOML-A75 scaffold30_size50338, whole genome shotgun sequence (50338 bp)
Overview 1 RT 1: 40585-45140 bp Neighborhood of RT #1 [40585, 45154] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 40585-41598 bp Feature: domain Description: AbiEii Location: 40711-41545 bp Feature: domain Description: AbiEii Location: 40711-415 45 bp Feature: gene Location: 41595-42191 bp Feature: domain Description: AbiEi_3_N Location: 41670-41913 bp Feature: domain Description: AbiEi_3_N Location: 41670-41913 bp Feature: gene Location: 42544-43818 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42769-43459 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 42769-4345 9 bp Feature: gene Location: 43815-44273 bp Feature: domain Description: MutS_I Location: 43860-44055 bp Feature: domain Description: MutS_I Location: 43860-4405 5 bp Feature: gene Location: 44297-45154 bp Feature: domain Description: HTH_18 Location: 44906-45140 bp Feature: domain Description: HTH_18 Location: 44906-45 140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCWC01000057.1 Bacteroides uniformis strain BIOML-A75 scaffold57_size25627, whole genome shotgun sequence (25627 bp)
Overview 1 RT 1: 3283-7475 bp Neighborhood of RT #1 [3283, 7475] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 3283-3453 bp Feature: gene Location: 3458-3703 bp Feature: gene Location: 3745-5607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4069-4891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 406 9-4891 bp Feature: domain Description: Intron_maturas2 Location: 4999-5269 bp Feature: domain Description: Intron_maturas2 Location: 4999-526 9 bp Feature: gene Location: 5597-6766 bp Feature: domain Description: TraG-D_C Location: 6113-6446 bp Feature: domain Description: TraG-D_C Location: 6 113-6 446 bp Feature: gene Location: 7062-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCWC01000075.1 Bacteroides uniformis strain BIOML-A75 scaffold75_size20840, whole genome shotgun sequence (20840 bp)
Overview 1 RT 1: 14637-18428 bp Neighborhood of RT #1 [14637, 18428] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 14637-15029 bp Feature: gene Location: 15100-16305 bp Feature: domain Description: TraG-D_C Location: 15682-16012 bp Feature: domain Description: TraG-D_C Location: 15682-16012 bp Feature: gene Location: 16310-17962 bp Feature: domain Description: RVT_N Location: 16364-16607 bp Feature: domain Description: RVT_N Location: 16364-16607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16652-17300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16652-17 300 bp Feature: domain Description: GIIM Note: maturase Location: 17354-17585 bp Feature: domain Description: GIIM Note: maturase Location: 17 354-17 585 bp Feature: gene Location: 18047-18217 bp Feature: gene Location: 18279-18428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)