myRT

myRT report for GCA_009019345.1_ASM901934v1

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Seq: WCWE01000024.1 Bacteroides uniformis strain BIOML-A77 scaffold24_size63604, whole genome shotgun sequence (63604 bp)
Overview 1 RT 1: 61623-63108 bp Neighborhood of RT #1 [61623, 63602] RVT-DGRs Feature: gene Location: 61623-61865 bp Feature: gene Location: 62068-62553 bp Feature: gene Location: 62550-63602 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62553-63108 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62553-631 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWE01000002.1 Bacteroides uniformis strain BIOML-A77 scaffold2_size318117, whole genome shotgun sequence (318117 bp)
Overview 1 RT 1: 168236-174568 bp Neighborhood of RT #1 [168236, 174568] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 168236-169303 bp Feature: domain Description: AAA_25 Location: 168371-168833 bp Feature: domain Description: AAA_2 5 Location: 168371-168833 bp Feature: gene Location: 169515-169697 bp Feature: gene Location: 170245-172053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170509-171331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170509-171331 bp Feature: domain Description: Intron_maturas2 Location: 171400-171709 bp Feature: domain Description: Intron_maturas2 Location: 171400-171709 bp Feature: gene Location: 172025-172954 bp Feature: domain Description: Toprim_2 Location: 172577-172865 bp Feature: domain Description: Toprim_2 Location: 172 577-172 865 bp Feature: gene Location: 173165-174568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: WCWE01000004.1 Bacteroides uniformis strain BIOML-A77 scaffold4_size167906, whole genome shotgun sequence (167906 bp)
Overview 1 RT 1: 83327-92804 bp Neighborhood of RT #1 [83327, 92804] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 83327-90073 bp Feature: domain Description: Laminin_G_3 Location: 84791-84884 bp Feature: domain Description: Laminin_G_3 Location: 84791-84884 bp Feature: domain Description: Laminin_G_3 Location: 85529-85952 bp Feature: domain Description: Laminin_G_3 Location: 85529-85952 bp Feature: gene Location: 90324-90524 bp Feature: gene Location: 90596-91900 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90809-91403 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 90809-91403 bp Feature: gene Location: 91897-92382 bp Feature: gene Location: 92562-92804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: WCWE01000059.1 Bacteroides uniformis strain BIOML-A77 scaffold59_size22156, whole genome shotgun sequence (22156 bp)
Overview 1 RT 1: 18157-22108 bp Neighborhood of RT #1 [18157, 22108] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 18157-18723 bp Feature: domain Description: cNMP_binding Location: 18244-18505 bp Feature: domain Description: cNMP_binding Location: 1824 4 -18505 bp Feature: gene Location: 18863-20191 bp Feature: gene Location: 20145-21812 bp Feature: domain Description: RVT_N Location: 20199-20442 bp Feature: domain Description: RVT_N Location: 20199-204 4 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20487-21135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204 87-21135 bp Feature: domain Description: GIIM Note: maturase Location: 21189-21420 bp Feature: domain Description: GIIM Note: maturase Location: 21189-214 20 bp Feature: gene Location: 21827-22108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWE01000005.1 Bacteroides uniformis strain BIOML-A77 scaffold5_size149286, whole genome shotgun sequence (149286 bp)
Overview 1 RT 1: 102683-106906 bp Neighborhood of RT #1 [102683, 106906] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 102683-103096 bp Feature: gene Location: 103392-104573 bp Feature: domain Description: TraG-D_C Location: 103920-104253 bp Feature: domain Description: TraG-D_C Location: 103920-10425 3 bp Feature: gene Location: 104551-106413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104875-105697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104875 -105 697 bp Feature: domain Description: Intron_maturas2 Location: 105805-106075 bp Feature: domain Description: Intron_maturas2 Location: 105 805 -106075 bp Feature: gene Location: 106455-106700 bp Feature: gene Location: 106676-106906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWE01000074.1 Bacteroides uniformis strain BIOML-A77 scaffold74_size14113, whole genome shotgun sequence (14113 bp)
Overview 1 RT 1: 294-4514 bp Neighborhood of RT #1 [294, 4534] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 294-2030 bp Feature: domain Description: RVT_N Location: 417-660 bp Feature: domain Description: RVT_N Location: 417-6 6 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705-1353 bp Feature: domain Description: YkfC Location: 1563-1653 bp Feature: domain Description: YkfC Location: 156 3-16 53 bp Feature: gene Location: 1984-3234 bp Feature: gene Location: 3404-4534 bp Feature: domain Description: HTH_ARAC Location: 4268-4514 bp Feature: domain Description: HTH_ARAC Location: 426 8-4514 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCWE01000078.1 Bacteroides uniformis strain BIOML-A77 scaffold78_size13265, whole genome shotgun sequence (13265 bp)
Overview 1 RT 1: 802-7018 bp Neighborhood of RT #1 [802, 7018] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 802-2052 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: domain Description: Relaxase Location: 904-1354 bp Feature: gene Location: 2085-3011 bp Feature: domain Description: YWFCY Location: 2094-2271 bp Feature: domain Description: YWFCY Location: 2094-227 1 bp Feature: gene Location: 3648-5300 bp Feature: domain Description: RVT_N Location: 3702-3945 bp Feature: domain Description: RVT_N Location: 37 02-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3990-4638 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: domain Description: GIIM Note: maturase Location: 4692-4923 bp Feature: gene Location: 5305-6510 bp Feature: domain Description: TraG-D_C Location: 5887-6217 bp Feature: domain Description: TraG-D_C Location: 5887 -6217 bp Feature: gene Location: 6605-7018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCWE01000082.1 Bacteroides uniformis strain BIOML-A77 scaffold82_size15837, whole genome shotgun sequence (15837 bp)
Overview 1 RT 1: 8050-12566 bp Neighborhood of RT #1 [8050, 12619] HTH_18 MutS_I RVT-DGRs AbiEi_3_N AbiEii Feature: gene Location: 8050-8907 bp Feature: domain Description: HTH_18 Location: 8659-8893 bp Feature: domain Description: HTH_18 Location: 8 659-8 8 93 bp Feature: gene Location: 8931-9389 bp Feature: domain Description: MutS_I Location: 8976-9171 bp Feature: domain Description: MutS_I Location: 8 976-9171 bp Feature: gene Location: 9386-10660 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9611-10301 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9611-10301 bp Feature: gene Location: 11013-11609 bp Feature: domain Description: AbiEi_3_N Location: 11088-11331 bp Feature: domain Description: AbiEi_3_N Location: 1108 8 -11331 bp Feature: gene Location: 11606-12619 bp Feature: domain Description: AbiEii Location: 11732-12566 bp Feature: domain Description: AbiEii Location: 11732-12566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, AbiEi_3_N (pfam17194), AbiEii (pfam08843)

Seq: WCWE01000093.1 Bacteroides uniformis strain BIOML-A77 scaffold93_size6843, whole genome shotgun sequence (6843 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809 -49 20 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5354-5513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)