myRT

myRT report for GCA_009019355.1_ASM901935v1

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Seq: WCWD01000115.1 Bacteroides uniformis strain BIOML-A76 scaffold115_size2867, whole genome shotgun sequence (2867 bp)
Overview 1 RT 1: 2-2688 bp Neighborhood of RT #1 [2, 2688] RVT_N RVT-GII GIIM Feature: gene Location: 2-565 bp Feature: gene Location: 570-2222 bp Feature: domain Description: RVT_N Location: 624-867 bp Feature: domain Description: RVT_N Location: 624-867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 2-1 560 bp Feature: domain Description: GIIM Note: maturase Location: 1614-1845 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 4-1 845 bp Feature: gene Location: 2304-2477 bp Feature: gene Location: 2539-2688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWD01000013.1 Bacteroides uniformis strain BIOML-A76 scaffold13_size95903, whole genome shotgun sequence (95903 bp)
Overview 1 RT 1: 88374-92597 bp Neighborhood of RT #1 [88374, 92597] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 88374-88787 bp Feature: gene Location: 89083-90264 bp Feature: domain Description: TraG-D_C Location: 89611-89944 bp Feature: domain Description: TraG-D_C Location: 89611-89944 bp Feature: gene Location: 90242-92104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90566-91388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90566-91388 bp Feature: domain Description: Intron_maturas2 Location: 91496-91766 bp Feature: domain Description: Intron_maturas2 Location: 91496-91766 bp Feature: gene Location: 92146-92391 bp Feature: gene Location: 92385-92597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWD01000001.1 Bacteroides uniformis strain BIOML-A76 scaffold1_size318074, whole genome shotgun sequence (318074 bp)
Overview 1 RT 1: 143530-148634 bp Neighborhood of RT #1 [143530, 148634] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143530-144933 bp Feature: gene Location: 145144-146073 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: gene Location: 146045-147853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-147131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1463 09-14713 1 bp Feature: domain Description: Intron_maturas2 Location: 147200-147509 bp Feature: domain Description: Intron_maturas2 Location: 147200-147509 bp Feature: gene Location: 148142-148285 bp Feature: gene Location: 148401-148634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWD01000037.1 Bacteroides uniformis strain BIOML-A76 scaffold37_size52400, whole genome shotgun sequence (52400 bp)
Overview 1 RT 1: 42641-47196 bp Neighborhood of RT #1 [42641, 47210] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 42641-43654 bp Feature: domain Description: AbiEii Location: 42767-43601 bp Feature: domain Description: AbiEii Location: 4 2767-4 3601 bp Feature: gene Location: 43651-44247 bp Feature: domain Description: AbiEi_3_N Location: 43726-43969 bp Feature: domain Description: AbiEi_3_N Location: 4 3726-4 3969 bp Feature: gene Location: 44600-45874 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44825-45515 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 4 825-4 5515 bp Feature: gene Location: 45871-46329 bp Feature: domain Description: MutS_I Location: 45916-46111 bp Feature: domain Description: MutS_I Location: 4 5916-4 6111 bp Feature: gene Location: 46353-47210 bp Feature: domain Description: HTH_18 Location: 46962-47196 bp Feature: domain Description: HTH_18 Location: 4 6962-4 7196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCWD01000057.1 Bacteroides uniformis strain BIOML-A76 scaffold57_size21962, whole genome shotgun sequence (21962 bp)
Overview 1 RT 1: 272-4492 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 395 -638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 15 41-1631 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3382-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCWD01000060.1 Bacteroides uniformis strain BIOML-A76 scaffold60_size18737, whole genome shotgun sequence (18737 bp)
Overview 1 RT 1: 14760-18711 bp Neighborhood of RT #1 [14760, 18711] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 14760-15326 bp Feature: domain Description: cNMP_binding Location: 14847-15108 bp Feature: domain Description: cNMP_binding Location: 14847-15108 bp Feature: gene Location: 15466-16794 bp Feature: gene Location: 16748-18415 bp Feature: domain Description: RVT_N Location: 16802-17045 bp Feature: domain Description: RVT_N Location: 16 802-17045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17090-17738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17090-17738 bp Feature: domain Description: GIIM Note: maturase Location: 17792-18023 bp Feature: domain Description: GIIM Note: maturase Location: 17792-18023 bp Feature: gene Location: 18430-18711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWD01000092.1 Bacteroides uniformis strain BIOML-A76 scaffold92_size6753, whole genome shotgun sequence (6753 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 87 -4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)