myRT

myRT report for GCA_009019385.1_ASM901938v1

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Seq: WCWA01000001.1 Bacteroides uniformis strain BIOML-A73 scaffold1_size314694, whole genome shotgun sequence (314685 bp)
Overview 1 RT 1: 284931-290035 bp Neighborhood of RT #1 [284931, 290035] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 284931-286334 bp Feature: gene Location: 286545-287474 bp Feature: domain Description: Toprim_2 Location: 287097-287385 bp Feature: domain Description: Toprim_2 Location: 287097-287385 bp Feature: gene Location: 287446-289254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287710-288532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28771 0-288532 bp Feature: domain Description: Intron_maturas2 Location: 288601-288910 bp Feature: domain Description: Intron_maturas2 Location: 288601 -28891 0 bp Feature: gene Location: 289543-289686 bp Feature: gene Location: 289802-290035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWA01000002.1 Bacteroides uniformis strain BIOML-A73 scaffold2_size221256, whole genome shotgun sequence (221256 bp)
Overview 1 RT 1: 39903-44913 bp Neighborhood of RT #1 [39903, 45179] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C DUF4326 Feature: gene Location: 39903-40913 bp Feature: domain Description: YWFCY Location: 39909-40086 bp Feature: domain Description: YWFCY Location: 39909-40086 bp Feature: gene Location: 40941-41456 bp Feature: gene Location: 41458-43263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41722-42544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172 2 -42 544 bp Feature: domain Description: Intron_maturas2 Location: 42622-42952 bp Feature: domain Description: Intron_maturas2 Location: 42 62 2 -42 952 bp Feature: domain Description: HNHc Note: nucleases Location: 43096-43240 bp Feature: domain Description: HNHc Note: nucleases Location: 43096-432 40 bp Feature: gene Location: 43250-44419 bp Feature: domain Description: TraG-D_C Location: 43775-44108 bp Feature: domain Description: TraG-D_C Location: 43775-44108 bp Feature: gene Location: 44637-45179 bp Feature: domain Description: DUF4326 Location: 44658-44913 bp Feature: domain Description: DUF432 6 Location: 44658-44913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: WCWA01000041.1 Bacteroides uniformis strain BIOML-A73 scaffold41_size47356, whole genome shotgun sequence (47356 bp)
Overview 1 RT 1: 42941-47133 bp Neighborhood of RT #1 [42941, 47133] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 42941-43111 bp Feature: gene Location: 43101-43361 bp Feature: gene Location: 43403-45265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43727-44549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 727-44549 bp Feature: domain Description: Intron_maturas2 Location: 44657-44927 bp Feature: domain Description: Intron_maturas2 Location: 44657-44927 bp Feature: gene Location: 45243-46424 bp Feature: domain Description: TraG-D_C Location: 45771-46104 bp Feature: domain Description: TraG-D_C Location: 45771-46104 bp Feature: gene Location: 46720-47133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCWA01000047.1 Bacteroides uniformis strain BIOML-A73 scaffold47_size33003, whole genome shotgun sequence (33003 bp)
Overview 1 RT 1: 5213-9112 bp Neighborhood of RT #1 [5213, 10104] HTH_18 MutS_I RVT-DGRs Avd_like BF2867_like_N Feature: gene Location: 5213-6070 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: domain Description: HTH_18 Location: 5822-6056 bp Feature: gene Location: 6094-6552 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: domain Description: MutS_I Location: 6139-6334 bp Feature: gene Location: 6549-7823 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774-7464 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6774 -74 64 bp Feature: gene Location: 8107-8481 bp Feature: domain Description: Avd_like Location: 8134-8440 bp Feature: domain Description: Avd_like Location: 8134 -84 4 0 bp Feature: gene Location: 8551-10104 bp Feature: domain Description: BF2867_like_N Location: 8587-9112 bp Feature: domain Description: BF2867_like_N Location: 8587-9112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, Avd_like (cd16376), BF2867_like_N (cd13120)

Seq: WCWA01000060.1 Bacteroides uniformis strain BIOML-A73 scaffold60_size18249, whole genome shotgun sequence (18249 bp)
Overview 1 RT 1: 14250-18201 bp Neighborhood of RT #1 [14250, 18201] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 14250-14816 bp Feature: domain Description: cNMP_binding Location: 14337-14598 bp Feature: domain Description: cNMP_binding Location: 14337-145 98 bp Feature: gene Location: 14956-16284 bp Feature: gene Location: 16238-17905 bp Feature: domain Description: RVT_N Location: 16292-16535 bp Feature: domain Description: RVT_N Location: 16292-165 35 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16580-17228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165 80-17228 bp Feature: domain Description: GIIM Note: maturase Location: 17282-17513 bp Feature: domain Description: GIIM Note: maturase Location: 17282-175 13 bp Feature: gene Location: 17920-18201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWA01000068.1 Bacteroides uniformis strain BIOML-A73 scaffold68_size14120, whole genome shotgun sequence (14120 bp)
Overview 1 RT 1: 9587-13450 bp Neighborhood of RT #1 [9587, 13827] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 9587-10717 bp Feature: domain Description: HTH_ARAC Location: 10451-10697 bp Feature: domain Description: HTH_ARAC Location: 10451-106 97 bp Feature: gene Location: 10887-12137 bp Feature: gene Location: 12091-13827 bp Feature: domain Description: RVT_N Location: 12214-12457 bp Feature: domain Description: RVT_N Location: 12214-12457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12502-13150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12502-13150 bp Feature: domain Description: YkfC Location: 13360-13450 bp Feature: domain Description: YkfC Location: 1336 0-13450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCWA01000073.1 Bacteroides uniformis strain BIOML-A73 scaffold73_size15005, whole genome shotgun sequence (15005 bp)
Overview 1 RT 1: 6243-10079 bp Neighborhood of RT #1 [6243, 10079] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 6243-6656 bp Feature: gene Location: 6751-7956 bp Feature: domain Description: TraG-D_C Location: 7333-7663 bp Feature: domain Description: TraG-D_C Location: 7 333-7 663 bp Feature: gene Location: 7961-9613 bp Feature: domain Description: RVT_N Location: 8015-8258 bp Feature: domain Description: RVT_N Location: 8015-8258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8303-8951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8303-8951 bp Feature: domain Description: GIIM Note: maturase Location: 9005-9236 bp Feature: domain Description: GIIM Note: maturase Location: 9005-9236 bp Feature: gene Location: 9720-9884 bp Feature: gene Location: 9930-10079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCWA01000007.1 Bacteroides uniformis strain BIOML-A73 scaffold7_size142594, whole genome shotgun sequence (142594 bp)
Overview 1 RT 1: 140678-142098 bp Neighborhood of RT #1 [140678, 142592] RVT-DGRs Feature: gene Location: 140678-140920 bp Feature: gene Location: 141124-141609 bp Feature: gene Location: 141606-142592 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141612-142098 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 141612-142098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCWA01000088.1 Bacteroides uniformis strain BIOML-A73 scaffold88_size6620, whole genome shotgun sequence (6620 bp)
Overview 1 RT 1: 3000-5513 bp Neighborhood of RT #1 [3000, 5551] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 3000-3449 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: domain Description: GDP_FS_SDR_e Location: 3021-3423 bp Feature: gene Location: 3442-4215 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: domain Description: GDP_FS_SDR_e Location: 3445-4189 bp Feature: gene Location: 4806-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809-4920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809 -49 20 bp Feature: gene Location: 4962-5285 bp Feature: gene Location: 5330-5551 bp Feature: domain Description: Gmd Location: 5354-5513 bp Feature: domain Description: Gmd Location: 5354-5513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)