myRT

myRT report for GCA_009019395.1_ASM901939v1

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Seq: WCWB01000108.1 Bacteroides uniformis strain BIOML-A74 scaffold108_size3904, whole genome shotgun sequence (3904 bp)
Overview 1 RT 1: 3-3901 bp Neighborhood of RT #1 [3, 3903] YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-914 bp Feature: domain Description: YWFCY Location: 6-174 bp Feature: domain Description: YWFCY Location: 6-1 74 bp Feature: gene Location: 1551-3203 bp Feature: domain Description: RVT_N Location: 1605-1848 bp Feature: domain Description: RVT_N Location: 1 605-1 848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 893-2541 bp Feature: domain Description: GIIM Note: maturase Location: 2595-2826 bp Feature: domain Description: GIIM Note: maturase Location: 2595-2826 bp Feature: gene Location: 3208-3903 bp Feature: domain Description: TraG-D_C Location: 3790-3901 bp Feature: domain Description: TraG-D_C Location: 3790-3901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCWB01000002.1 Bacteroides uniformis strain BIOML-A74 scaffold2_size316294, whole genome shotgun sequence (316294 bp)
Overview 1 RT 1: 143530-148634 bp Neighborhood of RT #1 [143530, 148634] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143530-144933 bp Feature: gene Location: 145144-146073 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: domain Description: Toprim_2 Location: 145696-145984 bp Feature: gene Location: 146045-147853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-147131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146309-147131 bp Feature: domain Description: Intron_maturas2 Location: 147200-147509 bp Feature: domain Description: Intron_maturas2 Location: 1472 00-147509 bp Feature: gene Location: 148142-148285 bp Feature: gene Location: 148401-148634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWB01000037.1 Bacteroides uniformis strain BIOML-A74 scaffold37_size52404, whole genome shotgun sequence (52404 bp)
Overview 1 RT 1: 42645-47200 bp Neighborhood of RT #1 [42645, 47214] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 42645-43658 bp Feature: domain Description: AbiEii Location: 42771-43605 bp Feature: domain Description: AbiEii Location: 42771-43 605 bp Feature: gene Location: 43655-44251 bp Feature: domain Description: AbiEi_3_N Location: 43730-43973 bp Feature: domain Description: AbiEi_3 _N Location: 43 73 0-43 973 bp Feature: gene Location: 44604-45878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44829-45519 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44829-45519 bp Feature: gene Location: 45875-46333 bp Feature: domain Description: MutS_I Location: 45920-46115 bp Feature: domain Description: MutS_I Location: 45920-46115 bp Feature: gene Location: 46357-47214 bp Feature: domain Description: HTH_18 Location: 46966-47200 bp Feature: domain Description: HTH_18 Location: 46966-47200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCWB01000057.1 Bacteroides uniformis strain BIOML-A74 scaffold57_size21381, whole genome shotgun sequence (21381 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: gene Location: 2003-3865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327-3149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327-314 9 bp Feature: domain Description: Intron_maturas2 Location: 3257-3527 bp Feature: domain Description: Intron_maturas2 Location: 3257-3527 bp Feature: gene Location: 3907-4152 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCWB01000058.1 Bacteroides uniformis strain BIOML-A74 scaffold58_size21375, whole genome shotgun sequence (21375 bp)
Overview 1 RT 1: 272-4492 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 395 -638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 15 41-1631 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3382-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCWB01000059.1 Bacteroides uniformis strain BIOML-A74 scaffold59_size21366, whole genome shotgun sequence (21366 bp)
Overview 1 RT 1: 323-3760 bp Neighborhood of RT #1 [323, 3978] RVT_N RVT-GII GIIM cNMP_binding Feature: gene Location: 323-1990 bp Feature: domain Description: RVT_N Location: 377-620 bp Feature: domain Description: RVT_N Location: 377-6 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 5-1313 bp Feature: domain Description: GIIM Note: maturase Location: 1367-1598 bp Feature: domain Description: GIIM Note: maturase Location: 136 7-1598 bp Feature: gene Location: 1944-3272 bp Feature: gene Location: 3412-3978 bp Feature: domain Description: cNMP_binding Location: 3499-3760 bp Feature: domain Description: cNMP_binding Location: 3499-376 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cNMP_binding (pfam00027)

Seq: WCWB01000090.1 Bacteroides uniformis strain BIOML-A74 scaffold90_size7128, whole genome shotgun sequence (7128 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 87 -4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)