myRT

myRT report for GCA_009019435.1_ASM901943v1

Download annotations/find similar RTs

Seq: WCVZ01000100.1 Bacteroides uniformis strain BIOML-A72 scaffold100_size13051, whole genome shotgun sequence (13051 bp)
Overview 1 RT 1: 272-4492 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1 331 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 1 541 -1 631 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3355-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCVZ01000105.1 Bacteroides uniformis strain BIOML-A72 scaffold105_size12570, whole genome shotgun sequence (12570 bp)
Overview 1 RT 1: 710-6926 bp Neighborhood of RT #1 [710, 6926] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 710-1960 bp Feature: domain Description: Relaxase Location: 812-1262 bp Feature: domain Description: Relaxase Location: 812 -12 62 bp Feature: gene Location: 1993-2919 bp Feature: domain Description: YWFCY Location: 2002-2179 bp Feature: domain Description: YWFCY Location: 2 002 -2 179 bp Feature: gene Location: 3556-5208 bp Feature: domain Description: RVT_N Location: 3610-3853 bp Feature: domain Description: RVT_N Location: 3610-3853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3898-4546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3898-4546 bp Feature: domain Description: GIIM Note: maturase Location: 4600-4831 bp Feature: domain Description: GIIM Note: maturase Location: 4600-4831 bp Feature: gene Location: 5213-6418 bp Feature: domain Description: TraG-D_C Location: 5795-6125 bp Feature: domain Description: TraG-D_C Location: 5795-612 5 bp Feature: gene Location: 6513-6926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVZ01000109.1 Bacteroides uniformis strain BIOML-A72 scaffold109_size13188, whole genome shotgun sequence (13188 bp)
Overview 1 RT 1: 11125-12889 bp Neighborhood of RT #1 [11125, 12909] RVT-DGRs Feature: gene Location: 11125-11610 bp Feature: gene Location: 11607-12182 bp Feature: gene Location: 12283-12909 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12496-12889 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12496-12889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVZ01000134.1 Bacteroides uniformis strain BIOML-A72 scaffold134_size6495, whole genome shotgun sequence (6495 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-34 01 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 34 23-4 167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 787-4 898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-54 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCVZ01000016.1 Bacteroides uniformis strain BIOML-A72 scaffold16_size72717, whole genome shotgun sequence (72717 bp)
Overview 1 RT 1: 22778-28134 bp Neighborhood of RT #1 [22778, 32255] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 22778-23020 bp Feature: gene Location: 23200-23685 bp Feature: gene Location: 23682-24986 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23895-24489 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23895 -24489 bp Feature: gene Location: 24861-25301 bp Feature: gene Location: 25509-32255 bp Feature: domain Description: Laminin_G_3 Location: 26973-27066 bp Feature: domain Description: Laminin_G_3 Location: 26973-27066 bp Feature: domain Description: Laminin_G_3 Location: 27711-28134 bp Feature: domain Description: Laminin_G_3 Location: 27711-28134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: WCVZ01000192.1 Bacteroides uniformis strain BIOML-A72 scaffold192_size2383, whole genome shotgun sequence (2383 bp)
Overview 1 RT 1: 3-2382 bp Neighborhood of RT #1 [3, 2382] PRK07726 RVT-GII GIIM Feature: gene Location: 3-245 bp Feature: domain Description: PRK07726 Location: 6-225 bp Feature: domain Description: PRK07726 Location: 6 -225 bp Feature: gene Location: 724-2130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106 6 -16 84 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1948 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1948 bp Feature: gene Location: 2212-2382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), RVT-GII, GIIM (pfam08388)

Seq: WCVZ01000001.1 Bacteroides uniformis strain BIOML-A72 scaffold1_size303126, whole genome shotgun sequence (303126 bp)
Overview 1 RT 1: 280515-285619 bp Neighborhood of RT #1 [280515, 285619] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 280515-281918 bp Feature: gene Location: 282129-283058 bp Feature: domain Description: Toprim_2 Location: 282681-282969 bp Feature: domain Description: Toprim_2 Location: 282681-282969 bp Feature: gene Location: 283030-284838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283294-284116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283294-284116 bp Feature: domain Description: Intron_maturas2 Location: 284185-284494 bp Feature: domain Description: Intron_maturas2 Location: 284185-284494 bp Feature: gene Location: 285127-285270 bp Feature: gene Location: 285386-285619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVZ01000002.1 Bacteroides uniformis strain BIOML-A72 scaffold2_size222218, whole genome shotgun sequence (222218 bp)
Overview 1 RT 1: 39880-44890 bp Neighborhood of RT #1 [39880, 45156] YWFCY RVT-GII Intron_maturas2 HNHc TraG-D_C DUF4326 Feature: gene Location: 39880-40890 bp Feature: domain Description: YWFCY Location: 39886-40063 bp Feature: domain Description: YWFCY Location: 398 8 6-40063 bp Feature: gene Location: 40918-41433 bp Feature: gene Location: 41435-43240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41699-42521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41699-42521 bp Feature: domain Description: Intron_maturas2 Location: 42599-42929 bp Feature: domain Description: Intron_maturas2 Location: 42599-42929 bp Feature: domain Description: HNHc Note: nucleases Location: 43073-43217 bp Feature: domain Description: HNHc Note: nucleases Location: 43073-43217 bp Feature: gene Location: 43227-44396 bp Feature: domain Description: TraG-D_C Location: 43752-44085 bp Feature: domain Description: TraG-D_C Location: 43752-4408 5 bp Feature: gene Location: 44614-45156 bp Feature: domain Description: DUF4326 Location: 44635-44890 bp Feature: domain Description: DUF4326 Location: 44635-448 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: WCVZ01000049.1 Bacteroides uniformis strain BIOML-A72 scaffold49_size29863, whole genome shotgun sequence (29863 bp)
Overview 1 RT 1: 19787-24663 bp Neighborhood of RT #1 [19787, 24677] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 19787-21340 bp Feature: domain Description: BF2867_like_N Location: 19823-20348 bp Feature: domain Description: BF2867_like_N Location: 19 823-20348 bp Feature: gene Location: 21410-21784 bp Feature: domain Description: Avd_like Location: 21437-21743 bp Feature: domain Description: Avd_like Location: 21437-21743 bp Feature: gene Location: 22067-23341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22292-22982 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2229 2-229 82 bp Feature: gene Location: 23338-23796 bp Feature: domain Description: MutS_I Location: 23383-23578 bp Feature: domain Description: MutS_I Location: 23383-23578 bp Feature: gene Location: 23820-24677 bp Feature: domain Description: HTH_18 Location: 24429-24663 bp Feature: domain Description: HTH_18 Location: 24429 -24663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVZ01000078.1 Bacteroides uniformis strain BIOML-A72 scaffold78_size18205, whole genome shotgun sequence (18205 bp)
Overview 1 RT 1: 14228-18179 bp Neighborhood of RT #1 [14228, 18179] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 14228-14794 bp Feature: domain Description: cNMP_binding Location: 14315-14576 bp Feature: domain Description: cNMP_binding Location: 14315-14576 bp Feature: gene Location: 14934-16262 bp Feature: gene Location: 16216-17883 bp Feature: domain Description: RVT_N Location: 16270-16513 bp Feature: domain Description: RVT_N Location: 16270-16513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16558-17206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16558-17206 bp Feature: domain Description: GIIM Note: maturase Location: 17260-17491 bp Feature: domain Description: GIIM Note: maturase Location: 17260-17491 bp Feature: gene Location: 17898-18179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVZ01000086.1 Bacteroides uniformis strain BIOML-A72 scaffold86_size16241, whole genome shotgun sequence (16241 bp)
Overview 1 RT 1: 739-4929 bp Neighborhood of RT #1 [739, 4929] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 739-909 bp Feature: gene Location: 914-1159 bp Feature: gene Location: 1201-3063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1525-2347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1525-2347 bp Feature: domain Description: Intron_maturas2 Location: 2455-2725 bp Feature: domain Description: Intron_maturas2 Location: 2455-2725 bp Feature: gene Location: 3053-4222 bp Feature: domain Description: TraG-D_C Location: 3569-3902 bp Feature: domain Description: TraG-D_C Location: 3569-3902 bp Feature: gene Location: 4516-4929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)