myRT

myRT report for GCA_009019545.1_ASM901954v1

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Seq: WCVT01000109.1 Bacteroides uniformis strain BIOML-A66 scaffold109_size14160, whole genome shotgun sequence (14160 bp)
Overview 1 RT 1: 3283-7475 bp Neighborhood of RT #1 [3283, 7475] RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 3283-3453 bp Feature: gene Location: 3458-3703 bp Feature: gene Location: 3745-5607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4069-4891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4069-4891 bp Feature: domain Description: Intron_maturas2 Location: 4999-5269 bp Feature: domain Description: Intron_maturas2 Location: 4999-5269 bp Feature: gene Location: 5585-6766 bp Feature: domain Description: TraG-D_C Location: 6113-6446 bp Feature: domain Description: TraG-D_C Location: 61 1 3-6446 bp Feature: gene Location: 7062-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCVT01000110.1 Bacteroides uniformis strain BIOML-A66 scaffold110_size14083, whole genome shotgun sequence (14083 bp)
Overview 1 RT 1: 272-4492 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Feature: gene Location: 272-2008 bp Feature: RT Description: RVT_N Location: 395-638 bp Feature: RT Description: RVT_N Location: 395-638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3382-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 42 46-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342)

Seq: WCVT01000122.1 Bacteroides uniformis strain BIOML-A66 scaffold122_size10971, whole genome shotgun sequence (10971 bp)
Overview 1 RT 1: 3-4729 bp Neighborhood of RT #1 [3, 4729] RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-722 bp Feature: gene Location: 1359-3011 bp Feature: RT Description: RVT_N Location: 1413-1656 bp Feature: RT Description: RVT_N Location: 1413 -1656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701-2349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701-23 49 bp Feature: domain Description: GIIM Note: maturase Location: 2403-2634 bp Feature: domain Description: GIIM Note: maturase Location: 2403 -263 4 bp Feature: gene Location: 3016-4221 bp Feature: domain Description: TraG-D_C Location: 3598-3928 bp Feature: domain Description: TraG-D_C Location: 3 598-3 928 bp Feature: gene Location: 4316-4729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVT01000227.1 Bacteroides uniformis strain BIOML-A66 scaffold227_size1777, whole genome shotgun sequence (1777 bp)
Overview 1 RT 1: 280-1775 bp Neighborhood of RT #1 [280, 1775] RVT-DGRs Feature: gene Location: 280-1581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 493-1087 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 93-1087 bp Feature: gene Location: 1614-1775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVT01000045.1 Bacteroides uniformis strain BIOML-A66 scaffold45_size34431, whole genome shotgun sequence (34431 bp)
Overview 1 RT 1: 25774-29627 bp Neighborhood of RT #1 [25774, 30454] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 25774-25917 bp Feature: gene Location: 25938-27107 bp Feature: domain Description: TraG-D_C Location: 26463-26796 bp Feature: domain Description: TraG-D_C Location: 26463-26796 bp Feature: gene Location: 27094-28899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27358-28180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2735 8-28180 bp Feature: domain Description: Intron_maturas2 Location: 28258-28588 bp Feature: domain Description: Intron_maturas2 Location: 2825 8-285 88 bp Feature: domain Description: HNHc Note: nucleases Location: 28732-28876 bp Feature: domain Description: HNHc Note: nucleases Location: 28732-28876 bp Feature: gene Location: 28901-29416 bp Feature: gene Location: 29444-30454 bp Feature: domain Description: YWFCY Location: 29450-29627 bp Feature: domain Description: YWFCY Location: 2945 0-29627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCVT01000051.1 Bacteroides uniformis strain BIOML-A66 scaffold51_size30560, whole genome shotgun sequence (30560 bp)
Overview 1 RT 1: 20478-25356 bp Neighborhood of RT #1 [20478, 25370] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 20478-22031 bp Feature: domain Description: BF2867_like_N Location: 20514-21039 bp Feature: domain Description: BF286 7_like_N Location: 20514-21039 bp Feature: gene Location: 22101-22475 bp Feature: domain Description: Avd_like Location: 22128-22434 bp Feature: domain Description: Avd_like Location: 22128-22434 bp Feature: gene Location: 22652-24034 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22985-23675 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22985-236 75 bp Feature: gene Location: 24031-24489 bp Feature: domain Description: MutS_I Location: 24076-24271 bp Feature: domain Description: MutS_I Location: 24076 -24271 bp Feature: gene Location: 24513-25370 bp Feature: domain Description: HTH_18 Location: 25122-25356 bp Feature: domain Description: HTH_18 Location: 25122-25356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVT01000084.1 Bacteroides uniformis strain BIOML-A66 scaffold84_size19846, whole genome shotgun sequence (19846 bp)
Overview 1 RT 1: 15869-19820 bp Neighborhood of RT #1 [15869, 19820] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 15869-16435 bp Feature: domain Description: cNMP_binding Location: 15956-16217 bp Feature: domain Description: cNMP_binding Location: 15956-16217 bp Feature: gene Location: 16575-17903 bp Feature: gene Location: 17857-19524 bp Feature: RT Description: RVT_N Location: 17911-18154 bp Feature: RT Description: RVT_N Location: 17 911-18154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18199-18847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18199-18847 bp Feature: domain Description: GIIM Note: maturase Location: 18901-19132 bp Feature: domain Description: GIIM Note: maturase Location: 18901-19132 bp Feature: gene Location: 19539-19820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)