myRT

myRT report for GCA_009019555.1_ASM901955v1

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Seq: WCVS01000109.1 Bacteroides uniformis strain BIOML-A65 scaffold109_size14184, whole genome shotgun sequence (14184 bp)
Overview 1 RT 1: 6685-10908 bp Neighborhood of RT #1 [6685, 10908] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 6685-7098 bp Feature: gene Location: 7394-8575 bp Feature: domain Description: TraG-D_C Location: 7922-8255 bp Feature: domain Description: TraG-D_C Location: 7922-8255 bp Feature: gene Location: 8553-10415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8877-9699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8877-9699 bp Feature: domain Description: Intron_maturas2 Location: 9807-10077 bp Feature: domain Description: Intron_maturas2 Location: 9807-1 0077 bp Feature: gene Location: 10457-10702 bp Feature: gene Location: 10696-10908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVS01000010.1 Bacteroides uniformis strain BIOML-A65 scaffold10_size80174, whole genome shotgun sequence (80174 bp)
Overview 1 RT 1: 70874-75978 bp Neighborhood of RT #1 [70874, 75978] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 70874-72277 bp Feature: gene Location: 72488-73417 bp Feature: domain Description: Toprim_2 Location: 73040-73328 bp Feature: domain Description: Toprim_2 Location: 73040-7332 8 bp Feature: gene Location: 73389-75197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73653-74475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73653-74475 bp Feature: domain Description: Intron_maturas2 Location: 74544-74853 bp Feature: domain Description: Intron_maturas2 Location: 74544-74853 bp Feature: gene Location: 75486-75629 bp Feature: gene Location: 75745-75978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVS01000147.1 Bacteroides uniformis strain BIOML-A65 scaffold147_size9505, whole genome shotgun sequence (9505 bp)
Overview 1 RT 1: 4994-8857 bp Neighborhood of RT #1 [4994, 9234] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 4994-6124 bp Feature: domain Description: HTH_ARAC Location: 5858-6104 bp Feature: domain Description: HTH_ARAC Location: 5858-6104 bp Feature: gene Location: 6294-7544 bp Feature: gene Location: 7498-9234 bp Feature: domain Description: RVT_N Location: 7621-7864 bp Feature: domain Description: RVT_N Location: 7621-7864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7909-8557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7909-8557 bp Feature: domain Description: YkfC Location: 8767-8857 bp Feature: domain Description: YkfC Location: 8767-8857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCVS01000016.1 Bacteroides uniformis strain BIOML-A65 scaffold16_size57728, whole genome shotgun sequence (57728 bp)
Overview 1 RT 1: 32731-36584 bp Neighborhood of RT #1 [32731, 37411] TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 32731-32874 bp Feature: gene Location: 32895-34064 bp Feature: domain Description: TraG-D_C Location: 33420-33753 bp Feature: domain Description: TraG-D_C Location: 334 20-33753 bp Feature: gene Location: 34051-35856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34315-35137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 315-35137 bp Feature: domain Description: Intron_maturas2 Location: 35215-35545 bp Feature: domain Description: Intron_maturas2 Location: 35215-3554 5 bp Feature: domain Description: HNHc Note: nucleases Location: 35689-35833 bp Feature: domain Description: HNHc Note: nucleases Location: 35689-35833 bp Feature: gene Location: 35858-36373 bp Feature: gene Location: 36401-37411 bp Feature: domain Description: YWFCY Location: 36407-36584 bp Feature: domain Description: YWFCY Location: 364 07-36584 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)

Seq: WCVS01000179.1 Bacteroides uniformis strain BIOML-A65 scaffold179_size6401, whole genome shotgun sequence (6401 bp)
Overview 1 RT 1: 2953-5466 bp Neighborhood of RT #1 [2953, 5504] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2953-3402 bp Feature: domain Description: GDP_FS_SDR_e Location: 2974-3376 bp Feature: domain Description: GDP_FS_SDR_e Location: 2974-3376 bp Feature: gene Location: 3395-4168 bp Feature: domain Description: GDP_FS_SDR_e Location: 3398-4142 bp Feature: domain Description: GDP_FS_SDR_e Location: 3398-4142 bp Feature: gene Location: 4759-4893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-4873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-4873 bp Feature: gene Location: 4915-5238 bp Feature: gene Location: 5283-5504 bp Feature: domain Description: Gmd Location: 5307-5466 bp Feature: domain Description: Gmd Location: 5 307-5 466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)

Seq: WCVS01000182.1 Bacteroides uniformis strain BIOML-A65 scaffold182_size6222, whole genome shotgun sequence (6222 bp)
Overview 1 RT 1: 3-4729 bp Neighborhood of RT #1 [3, 4729] RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 3-722 bp Feature: gene Location: 1359-3011 bp Feature: domain Description: RVT_N Location: 1413-1656 bp Feature: domain Description: RVT_N Location: 1413-16 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701-2349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701-2349 bp Feature: domain Description: GIIM Note: maturase Location: 2403-2634 bp Feature: domain Description: GIIM Note: maturase Location: 2403-26 34 bp Feature: gene Location: 3016-4221 bp Feature: domain Description: TraG-D_C Location: 3598-3928 bp Feature: domain Description: TraG-D_C Location: 3598-3928 bp Feature: gene Location: 4316-4729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: WCVS01000247.1 Bacteroides uniformis strain BIOML-A65 scaffold247_size2273, whole genome shotgun sequence (2273 bp)
Overview 1 RT 1: 3-1879 bp Neighborhood of RT #1 [3, 2271] RVT-GII GIIM Feature: gene Location: 3-1010 bp Feature: gene Location: 964-2271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97 0-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1648-1879 bp Feature: domain Description: GIIM Note: maturase Location: 1648-187 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WCVS01000042.1 Bacteroides uniformis strain BIOML-A65 scaffold42_size32718, whole genome shotgun sequence (32718 bp)
Overview 1 RT 1: 22641-27518 bp Neighborhood of RT #1 [22641, 27532] BF2867_like_N Avd_like RVT-DGRs MutS_I HTH_18 Feature: gene Location: 22641-24194 bp Feature: domain Description: BF2867_like_N Location: 22677-23202 bp Feature: domain Description: BF28 67_like_N Location: 22677-23202 bp Feature: gene Location: 24264-24638 bp Feature: domain Description: Avd_like Location: 24291-24597 bp Feature: domain Description: Avd_like Location: 24291-24597 bp Feature: gene Location: 24922-26196 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25147-25837 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25147-258 37 bp Feature: gene Location: 26193-26651 bp Feature: domain Description: MutS_I Location: 26238-26433 bp Feature: domain Description: MutS_I Location: 26238 -26433 bp Feature: gene Location: 26675-27532 bp Feature: domain Description: HTH_18 Location: 27284-27518 bp Feature: domain Description: HTH_18 Location: 2728 4-27518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BF2867_like_N (cd13120), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)