myRT

myRT report for GCA_009019585.1_ASM901958v1

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Seq: WCVR01000128.1 Bacteroides uniformis strain BIOML-A64 scaffold128_size1711, whole genome shotgun sequence (1711 bp)
Overview 1 RT 1: 131-1708 bp Neighborhood of RT #1 [131, 1708] RVT-DGRs Feature: gene Location: 131-1432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 344-938 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 344-938 bp Feature: gene Location: 1529-1708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVR01000001.1 Bacteroides uniformis strain BIOML-A64 scaffold1_size318074, whole genome shotgun sequence (318074 bp)
Overview 1 RT 1: 143531-148635 bp Neighborhood of RT #1 [143531, 148635] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143531-144934 bp Feature: gene Location: 145145-146074 bp Feature: domain Description: Toprim_2 Location: 145697-145985 bp Feature: domain Description: Toprim_2 Location: 145697-145985 bp Feature: gene Location: 146046-147854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146310-147132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146310-147132 bp Feature: domain Description: Intron_maturas2 Location: 147201-147510 bp Feature: domain Description: Intron_maturas2 Location: 1472 01-147510 bp Feature: gene Location: 148143-148286 bp Feature: gene Location: 148402-148635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVR01000053.1 Bacteroides uniformis strain BIOML-A64 scaffold53_size27320, whole genome shotgun sequence (27320 bp)
Overview 1 RT 1: 272-4492 bp 2 RT 2: 20325-24161 bp Neighborhood of RT #1 [272, 4512] RVT_N RVT-GII YkfC HTH_ARAC Neighborhood of RT #2 [20325, 24161] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 272-2008 bp Feature: domain Description: RVT_N Location: 395-638 bp Feature: domain Description: RVT_N Location: 3 95-63 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 683 -13 3 1 bp Feature: domain Description: YkfC Location: 1541-1631 bp Feature: domain Description: YkfC Location: 1541-163 1 bp Feature: gene Location: 1962-3212 bp Feature: gene Location: 3382-4512 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: domain Description: HTH_ARAC Location: 4246-4492 bp Feature: gene Location: 20325-20738 bp Feature: gene Location: 20833-22038 bp Feature: domain Description: TraG-D_C Location: 21415-21745 bp Feature: domain Description: TraG-D_C Location: 21415-21745 bp Feature: gene Location: 22043-23695 bp Feature: domain Description: RVT_N Location: 22097-22340 bp Feature: domain Description: RVT_N Location: 22097-223 40 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22385-23033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 223 85-23 03 3 bp Feature: domain Description: GIIM Note: maturase Location: 23087-23318 bp Feature: domain Description: GIIM Note: maturase Location: 23 087-23 3 18 bp Feature: gene Location: 23802-23966 bp Feature: gene Location: 24012-24161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HTH_ARAC (smart00342), TraG-D_C (pfam12696), GIIM (pfam08388)

Seq: WCVR01000061.1 Bacteroides uniformis strain BIOML-A64 scaffold61_size20005, whole genome shotgun sequence (20005 bp)
Overview 1 RT 1: 16028-19979 bp Neighborhood of RT #1 [16028, 19979] cNMP_binding RVT_N RVT-GII GIIM Feature: gene Location: 16028-16594 bp Feature: domain Description: cNMP_binding Location: 16115-16376 bp Feature: domain Description: cNMP_binding Location: 16115-16376 bp Feature: gene Location: 16734-18062 bp Feature: gene Location: 18016-19683 bp Feature: domain Description: RVT_N Location: 18070-18313 bp Feature: domain Description: RVT_N Location: 18070-18313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18358-19006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18358-19006 bp Feature: domain Description: GIIM Note: maturase Location: 19060-19291 bp Feature: domain Description: GIIM Note: maturase Location: 19060-19291 bp Feature: gene Location: 19698-19979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cNMP_binding (pfam00027), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVR01000067.1 Bacteroides uniformis strain BIOML-A64 scaffold67_size16502, whole genome shotgun sequence (16502 bp)
Overview 1 RT 1: 6743-11298 bp Neighborhood of RT #1 [6743, 11312] AbiEii AbiEi_3_N RVT-DGRs MutS_I HTH_18 Feature: gene Location: 6743-7756 bp Feature: domain Description: AbiEii Location: 6869-7703 bp Feature: domain Description: AbiEii Location: 6869-7703 bp Feature: gene Location: 7753-8349 bp Feature: domain Description: AbiEi_3_N Location: 7828-8071 bp Feature: domain Description: AbiEi_3_N Location: 7828-8071 bp Feature: gene Location: 8702-9976 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8927-9617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8927-9617 bp Feature: gene Location: 9973-10431 bp Feature: domain Description: MutS_I Location: 10018-10213 bp Feature: domain Description: MutS_I Location: 10018-10213 bp Feature: gene Location: 10455-11312 bp Feature: domain Description: HTH_18 Location: 11064-11298 bp Feature: domain Description: HTH_18 Location: 11064-11298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), RVT-DGRs, MutS_I (pfam01624), HTH_18 (pfam12833)

Seq: WCVR01000092.1 Bacteroides uniformis strain BIOML-A64 scaffold92_size7664, whole genome shotgun sequence (7664 bp)
Overview 1 RT 1: 135-4358 bp Neighborhood of RT #1 [135, 4358] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 135-548 bp Feature: gene Location: 844-2025 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: domain Description: TraG-D_C Location: 1372-1705 bp Feature: gene Location: 2003-3805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267-3089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226 7-3089 bp Feature: domain Description: Intron_maturas2 Location: 3197-3467 bp Feature: domain Description: Intron_maturas2 Location: 3197-346 7 bp Feature: gene Location: 3907-4167 bp Feature: gene Location: 4128-4358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVR01000097.1 Bacteroides uniformis strain BIOML-A64 scaffold97_size7136, whole genome shotgun sequence (7136 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47 87 -4898 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)