myRT

myRT report for GCA_009019615.1_ASM901961v1

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Seq: WCVQ01000115.1 Bacteroides uniformis strain BIOML-A63 scaffold115_size5773, whole genome shotgun sequence (5773 bp)
Overview 1 RT 1: 1140-5274 bp Neighborhood of RT #1 [1140, 5651] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM Feature: gene Location: 1140-2396 bp Feature: domain Description: Relaxase Location: 1329-1779 bp Feature: domain Description: Relaxase Location: 1 329-1 779 bp Feature: domain Description: Relaxase Location: 1905-2166 bp Feature: domain Description: Relaxase Location: 1 905-21 66 bp Feature: gene Location: 2439-3362 bp Feature: domain Description: YWFCY Location: 2448-2622 bp Feature: domain Description: YWFCY Location: 2448-2622 bp Feature: gene Location: 3999-5651 bp Feature: domain Description: RVT_N Location: 4053-4296 bp Feature: domain Description: RVT_N Location: 4053-4296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4341-4989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4341 -4989 bp Feature: domain Description: GIIM Note: maturase Location: 5043-5274 bp Feature: domain Description: GIIM Note: maturase Location: 5043-5274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: WCVQ01000143.1 Bacteroides uniformis strain BIOML-A63 scaffold143_size1550, whole genome shotgun sequence (1550 bp)
Overview 1 RT 1: 131-1413 bp Neighborhood of RT #1 [131, 1433] RVT-DGRs Feature: gene Location: 131-706 bp Feature: gene Location: 807-1433 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1020-1413 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 102 0-1413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: WCVQ01000002.1 Bacteroides uniformis strain BIOML-A63 scaffold2_size628066, whole genome shotgun sequence (628066 bp)
Overview 1 RT 1: 143529-148633 bp Neighborhood of RT #1 [143529, 148633] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 143529-144932 bp Feature: gene Location: 145143-146072 bp Feature: domain Description: Toprim_2 Location: 145695-145983 bp Feature: domain Description: Toprim_2 Location: 145695-145983 bp Feature: gene Location: 146044-147852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146308-147130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1463 08-14713 0 bp Feature: domain Description: Intron_maturas2 Location: 147199-147508 bp Feature: domain Description: Intron_maturas2 Location: 147199-147508 bp Feature: gene Location: 148141-148284 bp Feature: gene Location: 148400-148633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: WCVQ01000038.1 Bacteroides uniformis strain BIOML-A63 scaffold38_size49113, whole genome shotgun sequence (49113 bp)
Overview 1 RT 1: 1889-6405 bp Neighborhood of RT #1 [1889, 6458] HTH_18 MutS_I RVT-DGRs AbiEi_3_N AbiEii Feature: gene Location: 1889-2746 bp Feature: domain Description: HTH_18 Location: 2498-2732 bp Feature: domain Description: HTH_18 Location: 24 98-2732 bp Feature: gene Location: 2770-3228 bp Feature: domain Description: MutS_I Location: 2815-3010 bp Feature: domain Description: MutS_I Location: 2815-3010 bp Feature: gene Location: 3225-4499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3450-4140 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34 50-4 14 0 bp Feature: gene Location: 4852-5448 bp Feature: domain Description: AbiEi_3_N Location: 4927-5170 bp Feature: domain Description: AbiEi_3_N Location: 4 927-5170 bp Feature: gene Location: 5445-6458 bp Feature: domain Description: AbiEii Location: 5571-6405 bp Feature: domain Description: AbiEii Location: 5571-64 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), MutS_I (pfam01624), RVT-DGRs, AbiEi_3_N (pfam17194), AbiEii (pfam08843)

Seq: WCVQ01000054.1 Bacteroides uniformis strain BIOML-A63 scaffold54_size21422, whole genome shotgun sequence (21422 bp)
Overview 1 RT 1: 15994-21288 bp Neighborhood of RT #1 [15994, 21288] YWFCY T4SS-DNA_transf RVT-GII Intron_maturas2 TraG-D_C Feature: gene Location: 15994-17007 bp Feature: domain Description: YWFCY Location: 16000-16177 bp Feature: domain Description: YWFCY Location: 16000-16177 bp Feature: domain Description: T4SS-DNA_transf Location: 16468-16975 bp Feature: domain Description: T4SS-DNA_transf Location: 16468-16975 bp Feature: gene Location: 17256-17516 bp Feature: gene Location: 17558-19420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17882-18704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17882-18704 bp Feature: domain Description: Intron_maturas2 Location: 18812-19082 bp Feature: domain Description: Intron_maturas2 Location: 18812-19082 bp Feature: gene Location: 19398-20579 bp Feature: domain Description: TraG-D_C Location: 19926-20259 bp Feature: domain Description: TraG-D_C Location: 19926-2025 9 bp Feature: gene Location: 20875-21288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), TraG-D_C (pfam12696)

Seq: WCVQ01000055.1 Bacteroides uniformis strain BIOML-A63 scaffold55_size20001, whole genome shotgun sequence (20001 bp)
Overview 1 RT 1: 323-3760 bp Neighborhood of RT #1 [323, 3978] RVT_N RVT-GII GIIM cNMP_binding Feature: gene Location: 323-1990 bp Feature: domain Description: RVT_N Location: 377-620 bp Feature: domain Description: RVT_N Location: 377-6 20 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 665-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 5-1313 bp Feature: domain Description: GIIM Note: maturase Location: 1367-1598 bp Feature: domain Description: GIIM Note: maturase Location: 136 7-1598 bp Feature: gene Location: 1944-3272 bp Feature: gene Location: 3412-3978 bp Feature: domain Description: cNMP_binding Location: 3499-3760 bp Feature: domain Description: cNMP_binding Location: 3499-376 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cNMP_binding (pfam00027)

Seq: WCVQ01000057.1 Bacteroides uniformis strain BIOML-A63 scaffold57_size19378, whole genome shotgun sequence (19378 bp)
Overview 1 RT 1: 14867-18730 bp Neighborhood of RT #1 [14867, 19107] HTH_ARAC RVT_N RVT-GII YkfC Feature: gene Location: 14867-16024 bp Feature: domain Description: HTH_ARAC Location: 15758-16004 bp Feature: domain Description: HTH_ARAC Location: 157 58-16004 bp Feature: gene Location: 16167-17417 bp Feature: gene Location: 17371-19107 bp Feature: domain Description: RVT_N Location: 17494-17737 bp Feature: domain Description: RVT_N Location: 17 494-17 7 37 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17782-18430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 7 82-18430 bp Feature: domain Description: YkfC Location: 18640-18730 bp Feature: domain Description: YkfC Location: 18640-187 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: WCVQ01000094.1 Bacteroides uniformis strain BIOML-A63 scaffold94_size6753, whole genome shotgun sequence (6753 bp)
Overview 1 RT 1: 2978-5491 bp Neighborhood of RT #1 [2978, 5529] GDP_FS_SDR_e GDP_FS_SDR_e RVT-GII Gmd Feature: gene Location: 2978-3427 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: domain Description: GDP_FS_SDR_e Location: 2999-3401 bp Feature: gene Location: 3420-4193 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: domain Description: GDP_FS_SDR_e Location: 3423-4167 bp Feature: gene Location: 4784-4918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4787-4898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478 7-48 98 bp Feature: gene Location: 4940-5263 bp Feature: gene Location: 5308-5529 bp Feature: domain Description: Gmd Location: 5332-5491 bp Feature: domain Description: Gmd Location: 5332-5491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), RVT-GII, Gmd (COG1089)